Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0735 and Atu0736 overlap by 4 nucleotides Atu0736 and Atu0738 are separated by 278 nucleotides
Atu0735: Atu0735 - RNA methyltransferase, at 734,323 to 735,573
Atu0735
Atu0736: Atu0736 - hemolysin, at 735,570 to 736,322
Atu0736
Atu0738: Atu0738 - chemotaxis methyl-accepting protein, at 736,601 to 738,622
Atu0738
Position (kb) 735
736
737 Strain fitness (log2 ratio) -1
0
1
2 at 734.597 kb on - strand, within Atu0735 at 734.613 kb on + strand, within Atu0735 at 734.613 kb on + strand, within Atu0735 at 734.621 kb on - strand, within Atu0735 at 734.653 kb on + strand, within Atu0735 at 734.661 kb on - strand, within Atu0735 at 734.729 kb on + strand, within Atu0735 at 734.737 kb on - strand, within Atu0735 at 734.774 kb on + strand, within Atu0735 at 735.164 kb on - strand, within Atu0735 at 735.232 kb on + strand, within Atu0735 at 735.307 kb on + strand, within Atu0735 at 735.400 kb on - strand, within Atu0735 at 735.439 kb on - strand, within Atu0735 at 735.443 kb on + strand, within Atu0735 at 735.443 kb on + strand, within Atu0735 at 735.443 kb on + strand, within Atu0735 at 735.444 kb on - strand, within Atu0735 at 735.451 kb on - strand at 735.488 kb on + strand at 735.514 kb on + strand at 735.516 kb on + strand at 735.576 kb on - strand at 735.640 kb on - strand at 735.717 kb on + strand, within Atu0736 at 735.841 kb on + strand, within Atu0736 at 735.919 kb on - strand, within Atu0736 at 735.920 kb on + strand, within Atu0736 at 735.963 kb on + strand, within Atu0736 at 735.988 kb on - strand, within Atu0736 at 736.046 kb on - strand, within Atu0736 at 736.079 kb on - strand, within Atu0736 at 736.105 kb on + strand, within Atu0736 at 736.110 kb on - strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.129 kb on + strand, within Atu0736 at 736.137 kb on - strand, within Atu0736 at 736.137 kb on - strand, within Atu0736 at 736.137 kb on - strand, within Atu0736 at 736.461 kb on - strand at 736.592 kb on - strand at 736.633 kb on + strand at 736.699 kb on + strand at 736.708 kb on - strand at 736.758 kb on - strand at 736.775 kb on - strand at 736.782 kb on + strand at 737.094 kb on + strand, within Atu0738 at 737.100 kb on - strand, within Atu0738 at 737.179 kb on - strand, within Atu0738 at 737.210 kb on + strand, within Atu0738 at 737.218 kb on - strand, within Atu0738 at 737.218 kb on - strand, within Atu0738 at 737.223 kb on - strand, within Atu0738
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 734,597 - Atu0735 0.22 -0.7 734,613 + Atu0735 0.23 -0.3 734,613 + Atu0735 0.23 -0.6 734,621 - Atu0735 0.24 -0.1 734,653 + Atu0735 0.26 +0.2 734,661 - Atu0735 0.27 -0.5 734,729 + Atu0735 0.32 -0.1 734,737 - Atu0735 0.33 -0.6 734,774 + Atu0735 0.36 +0.2 735,164 - Atu0735 0.67 +0.1 735,232 + Atu0735 0.73 -0.0 735,307 + Atu0735 0.79 +0.5 735,400 - Atu0735 0.86 -0.2 735,439 - Atu0735 0.89 -0.3 735,443 + Atu0735 0.90 -0.7 735,443 + Atu0735 0.90 +0.3 735,443 + Atu0735 0.90 -0.0 735,444 - Atu0735 0.90 +1.2 735,451 - +1.9 735,488 + +0.5 735,514 + -0.7 735,516 + +0.0 735,576 - +1.6 735,640 - +0.6 735,717 + Atu0736 0.20 +0.8 735,841 + Atu0736 0.36 +0.3 735,919 - Atu0736 0.46 -0.8 735,920 + Atu0736 0.46 -0.2 735,963 + Atu0736 0.52 -0.4 735,988 - Atu0736 0.56 -0.9 736,046 - Atu0736 0.63 -0.1 736,079 - Atu0736 0.68 +1.5 736,105 + Atu0736 0.71 +0.0 736,110 - Atu0736 0.72 -0.1 736,129 + Atu0736 0.74 -0.0 736,129 + Atu0736 0.74 +0.8 736,129 + Atu0736 0.74 -0.2 736,129 + Atu0736 0.74 +0.7 736,129 + Atu0736 0.74 +0.2 736,137 - Atu0736 0.75 +0.6 736,137 - Atu0736 0.75 +0.4 736,137 - Atu0736 0.75 +0.8 736,461 - +0.1 736,592 - +0.2 736,633 + +0.4 736,699 + +0.2 736,708 - +0.4 736,758 - +0.6 736,775 - +0.3 736,782 + -0.2 737,094 + Atu0738 0.24 +1.1 737,100 - Atu0738 0.25 +0.1 737,179 - Atu0738 0.29 +0.5 737,210 + Atu0738 0.30 +0.6 737,218 - Atu0738 0.31 +0.3 737,218 - Atu0738 0.31 -0.5 737,223 - Atu0738 0.31 -0.4
Or see this region's nucleotide sequence