Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8131 and Atu0513 are separated by 105 nucleotides Atu0513 and Atu0514 are separated by 404 nucleotides
Atu8131: Atu8131 - pH adaption potassium efflux system protein, at 500,224 to 503,142
Atu8131
Atu0513: Atu0513 - hypothetical protein, at 503,248 to 503,625
Atu0513
Atu0514: Atu0514 - methyl-accepting chemotaxis protein, at 504,030 to 505,736
Atu0514
Position (kb) 503
504 Strain fitness (log2 ratio) -1
0
1 at 502.343 kb on + strand, within Atu8131 at 502.343 kb on + strand, within Atu8131 at 502.343 kb on + strand, within Atu8131 at 502.351 kb on - strand, within Atu8131 at 502.351 kb on - strand, within Atu8131 at 502.351 kb on - strand, within Atu8131 at 502.351 kb on - strand, within Atu8131 at 502.351 kb on - strand, within Atu8131 at 502.474 kb on - strand, within Atu8131 at 502.588 kb on + strand, within Atu8131 at 502.633 kb on + strand, within Atu8131 at 502.750 kb on + strand, within Atu8131 at 502.837 kb on - strand, within Atu8131 at 502.841 kb on + strand, within Atu8131 at 502.868 kb on - strand at 502.868 kb on - strand at 502.868 kb on - strand at 502.868 kb on - strand at 503.019 kb on - strand at 503.049 kb on - strand at 503.079 kb on - strand at 503.165 kb on + strand at 503.194 kb on - strand at 503.260 kb on + strand at 503.285 kb on - strand at 503.382 kb on - strand, within Atu0513 at 503.420 kb on + strand, within Atu0513 at 503.420 kb on + strand, within Atu0513 at 503.437 kb on + strand, within Atu0513 at 503.465 kb on - strand, within Atu0513 at 503.465 kb on - strand, within Atu0513 at 503.478 kb on - strand, within Atu0513 at 503.507 kb on + strand, within Atu0513 at 503.507 kb on + strand, within Atu0513 at 503.515 kb on - strand, within Atu0513 at 503.663 kb on + strand at 503.671 kb on - strand at 503.671 kb on - strand at 503.671 kb on - strand at 503.671 kb on - strand at 503.722 kb on + strand at 503.730 kb on - strand at 503.730 kb on - strand at 503.952 kb on + strand at 503.958 kb on - strand at 503.997 kb on + strand at 504.015 kb on + strand at 504.123 kb on - strand at 504.158 kb on - strand at 504.205 kb on + strand, within Atu0514 at 504.251 kb on + strand, within Atu0514 at 504.251 kb on + strand, within Atu0514 at 504.271 kb on - strand, within Atu0514 at 504.285 kb on + strand, within Atu0514 at 504.302 kb on + strand, within Atu0514 at 504.371 kb on - strand, within Atu0514 at 504.384 kb on + strand, within Atu0514 at 504.384 kb on + strand, within Atu0514 at 504.425 kb on + strand, within Atu0514 at 504.425 kb on + strand, within Atu0514 at 504.468 kb on - strand, within Atu0514 at 504.544 kb on + strand, within Atu0514 at 504.551 kb on - strand, within Atu0514
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 502,343 + Atu8131 0.73 -0.1 502,343 + Atu8131 0.73 -0.6 502,343 + Atu8131 0.73 +0.4 502,351 - Atu8131 0.73 +0.1 502,351 - Atu8131 0.73 +0.0 502,351 - Atu8131 0.73 +0.0 502,351 - Atu8131 0.73 +0.1 502,351 - Atu8131 0.73 -0.5 502,474 - Atu8131 0.77 -0.6 502,588 + Atu8131 0.81 -0.1 502,633 + Atu8131 0.83 -0.3 502,750 + Atu8131 0.87 +0.2 502,837 - Atu8131 0.90 +0.0 502,841 + Atu8131 0.90 -0.8 502,868 - -0.0 502,868 - -0.2 502,868 - -0.1 502,868 - -0.7 503,019 - -0.6 503,049 - +0.4 503,079 - -0.4 503,165 + +0.6 503,194 - +0.1 503,260 + +0.0 503,285 - -0.2 503,382 - Atu0513 0.35 +0.8 503,420 + Atu0513 0.46 -0.7 503,420 + Atu0513 0.46 +0.2 503,437 + Atu0513 0.50 +1.7 503,465 - Atu0513 0.57 +0.1 503,465 - Atu0513 0.57 +0.2 503,478 - Atu0513 0.61 +0.6 503,507 + Atu0513 0.69 -0.2 503,507 + Atu0513 0.69 +0.1 503,515 - Atu0513 0.71 +0.3 503,663 + +1.0 503,671 - -0.1 503,671 - -0.1 503,671 - +0.4 503,671 - +1.0 503,722 + +0.6 503,730 - -0.2 503,730 - +0.4 503,952 + +0.0 503,958 - +0.3 503,997 + -0.1 504,015 + -0.3 504,123 - -0.3 504,158 - -1.0 504,205 + Atu0514 0.10 -0.6 504,251 + Atu0514 0.13 -0.8 504,251 + Atu0514 0.13 -0.8 504,271 - Atu0514 0.14 +0.3 504,285 + Atu0514 0.15 +0.3 504,302 + Atu0514 0.16 +0.4 504,371 - Atu0514 0.20 -0.2 504,384 + Atu0514 0.21 +0.6 504,384 + Atu0514 0.21 -1.3 504,425 + Atu0514 0.23 -0.5 504,425 + Atu0514 0.23 -1.3 504,468 - Atu0514 0.26 -0.2 504,544 + Atu0514 0.30 -0.1 504,551 - Atu0514 0.31 +0.0
Or see this region's nucleotide sequence