Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0169 and Atu0170 overlap by 4 nucleotides Atu0170 and Atu0171 are separated by 283 nucleotides
Atu0169: Atu0169 - hypothetical protein, at 172,980 to 174,116
Atu0169
Atu0170: Atu0170 - hypothetical protein, at 174,113 to 174,802
Atu0170
Atu0171: Atu0171 - ABC transporter, membrane spanning protein (phosphonate), at 175,086 to 176,435
Atu0171
Position (kb) 174
175 Strain fitness (log2 ratio) -1
0
1 at 173.155 kb on + strand, within Atu0169 at 173.163 kb on - strand, within Atu0169 at 173.315 kb on - strand, within Atu0169 at 173.316 kb on + strand, within Atu0169 at 173.383 kb on - strand, within Atu0169 at 173.461 kb on - strand, within Atu0169 at 173.611 kb on + strand, within Atu0169 at 173.617 kb on - strand, within Atu0169 at 173.617 kb on - strand, within Atu0169 at 173.656 kb on + strand, within Atu0169 at 173.830 kb on + strand, within Atu0169 at 173.840 kb on + strand, within Atu0169 at 173.877 kb on + strand, within Atu0169 at 173.923 kb on + strand, within Atu0169 at 173.923 kb on + strand, within Atu0169 at 173.923 kb on + strand, within Atu0169 at 173.923 kb on + strand, within Atu0169 at 173.931 kb on - strand, within Atu0169 at 173.931 kb on - strand, within Atu0169 at 174.029 kb on - strand at 174.045 kb on + strand at 174.053 kb on - strand at 174.091 kb on + strand at 174.099 kb on - strand at 174.109 kb on - strand at 174.310 kb on - strand, within Atu0170 at 174.347 kb on + strand, within Atu0170 at 174.347 kb on + strand, within Atu0170 at 174.347 kb on + strand, within Atu0170 at 174.355 kb on - strand, within Atu0170 at 174.419 kb on + strand, within Atu0170 at 174.427 kb on - strand, within Atu0170 at 174.429 kb on + strand, within Atu0170 at 174.437 kb on - strand, within Atu0170 at 174.623 kb on + strand, within Atu0170 at 174.631 kb on - strand, within Atu0170 at 174.719 kb on - strand, within Atu0170 at 174.748 kb on - strand at 174.883 kb on - strand at 174.980 kb on - strand at 174.995 kb on + strand at 174.998 kb on - strand at 175.003 kb on - strand at 175.010 kb on + strand at 175.010 kb on + strand at 175.028 kb on - strand at 175.172 kb on - strand at 175.177 kb on - strand at 175.331 kb on - strand, within Atu0171 at 175.384 kb on + strand, within Atu0171 at 175.385 kb on - strand, within Atu0171 at 175.418 kb on + strand, within Atu0171 at 175.423 kb on + strand, within Atu0171 at 175.423 kb on + strand, within Atu0171 at 175.423 kb on + strand, within Atu0171 at 175.423 kb on + strand, within Atu0171 at 175.431 kb on - strand, within Atu0171 at 175.431 kb on - strand, within Atu0171 at 175.431 kb on - strand, within Atu0171 at 175.431 kb on - strand, within Atu0171 at 175.437 kb on - strand, within Atu0171 at 175.461 kb on + strand, within Atu0171 at 175.524 kb on - strand, within Atu0171 at 175.524 kb on - strand, within Atu0171 at 175.524 kb on - strand, within Atu0171 at 175.634 kb on - strand, within Atu0171 at 175.644 kb on - strand, within Atu0171 at 175.689 kb on - strand, within Atu0171 at 175.772 kb on + strand, within Atu0171 at 175.777 kb on + strand, within Atu0171
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 173,155 + Atu0169 0.15 -1.1 173,163 - Atu0169 0.16 -0.1 173,315 - Atu0169 0.29 -0.0 173,316 + Atu0169 0.30 -0.3 173,383 - Atu0169 0.35 +0.5 173,461 - Atu0169 0.42 -1.2 173,611 + Atu0169 0.55 -0.3 173,617 - Atu0169 0.56 -0.7 173,617 - Atu0169 0.56 -0.5 173,656 + Atu0169 0.59 -0.2 173,830 + Atu0169 0.75 -0.1 173,840 + Atu0169 0.76 -0.8 173,877 + Atu0169 0.79 +0.3 173,923 + Atu0169 0.83 +1.1 173,923 + Atu0169 0.83 -0.3 173,923 + Atu0169 0.83 +0.7 173,923 + Atu0169 0.83 +0.9 173,931 - Atu0169 0.84 +0.0 173,931 - Atu0169 0.84 -0.2 174,029 - +0.7 174,045 + -0.8 174,053 - +0.8 174,091 + +1.3 174,099 - -1.7 174,109 - -0.4 174,310 - Atu0170 0.29 -1.0 174,347 + Atu0170 0.34 -1.4 174,347 + Atu0170 0.34 -0.6 174,347 + Atu0170 0.34 +0.1 174,355 - Atu0170 0.35 -0.3 174,419 + Atu0170 0.44 -0.5 174,427 - Atu0170 0.46 -0.3 174,429 + Atu0170 0.46 +0.7 174,437 - Atu0170 0.47 +0.5 174,623 + Atu0170 0.74 -0.8 174,631 - Atu0170 0.75 -0.5 174,719 - Atu0170 0.88 -0.3 174,748 - +0.1 174,883 - +0.4 174,980 - -0.6 174,995 + +0.4 174,998 - +0.5 175,003 - -0.4 175,010 + +0.4 175,010 + +0.2 175,028 - +0.9 175,172 - -0.0 175,177 - -0.3 175,331 - Atu0171 0.18 -1.3 175,384 + Atu0171 0.22 +0.2 175,385 - Atu0171 0.22 +0.1 175,418 + Atu0171 0.25 -0.1 175,423 + Atu0171 0.25 -0.4 175,423 + Atu0171 0.25 -0.1 175,423 + Atu0171 0.25 -0.2 175,423 + Atu0171 0.25 +0.2 175,431 - Atu0171 0.26 -0.8 175,431 - Atu0171 0.26 -0.1 175,431 - Atu0171 0.26 -0.7 175,431 - Atu0171 0.26 -0.0 175,437 - Atu0171 0.26 +0.1 175,461 + Atu0171 0.28 +0.9 175,524 - Atu0171 0.32 +1.2 175,524 - Atu0171 0.32 +0.3 175,524 - Atu0171 0.32 +0.1 175,634 - Atu0171 0.41 -0.2 175,644 - Atu0171 0.41 -0.4 175,689 - Atu0171 0.45 -0.6 175,772 + Atu0171 0.51 -0.3 175,777 + Atu0171 0.51 -0.5
Or see this region's nucleotide sequence