Strain Fitness in Agrobacterium fabrum C58 around Atu0109

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
111,033	+		Atu0108	0.42	+0.5
111,033	+		Atu0108	0.42	+0.4
111,041	-		Atu0108	0.43	-0.2
111,118	+		Atu0108	0.48	-1.1
111,273	+		Atu0108	0.60	+0.0
111,283	+		Atu0108	0.60	-0.1
111,443	-		Atu0108	0.72	+0.0
111,443	-		Atu0108	0.72	+1.4
111,452	+		Atu0108	0.72	-0.2
111,455	-		Atu0108	0.73	+0.3
111,462	-		Atu0108	0.73	-0.3
111,521	-		Atu0108	0.77	+0.1
111,546	-		Atu0108	0.79	-0.0
111,635	-		Atu0108	0.86	+0.4
111,661	+		Atu0108	0.87	+0.3
111,706	-				-0.4
111,743	+				-0.2
112,090	+		Atu0109	0.20	+0.6
112,106	+		Atu0109	0.24	-0.2
112,182	+		Atu0109	0.41	+0.4
112,217	+		Atu0109	0.49	+0.1
112,225	-		Atu0109	0.50	+0.6
112,225	-		Atu0109	0.50	+1.8
112,507	+				-0.5
112,515	-				-0.5
112,524	-				-0.2
112,609	+				+0.7
112,643	-				-0.4
112,666	-				+0.5
112,714	+				-0.1
112,738	+				-0.7
112,818	-		Atu8081	0.23	-0.1
112,836	+		Atu8081	0.27	-0.0
112,876	+		Atu8081	0.37	-0.3
112,979	+		Atu8081	0.62	+0.1
112,979	+		Atu8081	0.62	-0.4
112,979	+		Atu8081	0.62	-0.2
112,979	+		Atu8081	0.62	-0.1
112,987	-		Atu8081	0.64	-0.0
113,000	+		Atu8081	0.67	+0.8
113,015	+		Atu8081	0.71	-0.5
113,016	-		Atu8081	0.71	+0.9
113,043	+		Atu8081	0.78	+0.8
113,087	+		Atu8081	0.88	+0.4
113,109	+				-0.5
113,132	-				+1.2
113,173	+				+0.7