Experiment: methyl 3-keto-a-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0640 and Atu0641 are separated by 193 nucleotides Atu0641 and Atu0642 are separated by 74 nucleotides Atu0642 and Atu0643 are separated by 22 nucleotides
Atu0640: Atu0640 - hypothetical protein, at 627,263 to 627,580
Atu0640
Atu0641: Atu0641 - hypothetical protein, at 627,774 to 628,325
Atu0641
Atu0642: Atu0642 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 628,400 to 629,677
Atu0642
Atu0643: Atu0643 - hypothetical protein, at 629,700 to 631,637
Atu0643
Position (kb) 628
629
630 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 627.576 kb on + strand at 627.623 kb on - strand at 627.675 kb on - strand at 627.681 kb on - strand at 627.712 kb on + strand at 627.720 kb on - strand at 627.854 kb on + strand, within Atu0641 at 628.351 kb on + strand at 628.361 kb on + strand at 628.361 kb on + strand at 629.650 kb on + strand at 629.691 kb on + strand at 629.721 kb on - strand at 629.721 kb on - strand at 629.734 kb on + strand at 629.802 kb on - strand at 629.946 kb on + strand, within Atu0643 at 629.947 kb on - strand, within Atu0643 at 630.071 kb on + strand, within Atu0643 at 630.072 kb on + strand, within Atu0643 at 630.144 kb on + strand, within Atu0643 at 630.250 kb on + strand, within Atu0643 at 630.253 kb on - strand, within Atu0643 at 630.264 kb on - strand, within Atu0643 at 630.344 kb on + strand, within Atu0643 at 630.344 kb on + strand, within Atu0643 at 630.344 kb on + strand, within Atu0643 at 630.344 kb on + strand, within Atu0643 at 630.352 kb on - strand, within Atu0643 at 630.373 kb on - strand, within Atu0643 at 630.374 kb on - strand, within Atu0643 at 630.477 kb on - strand, within Atu0643 at 630.481 kb on + strand, within Atu0643 at 630.491 kb on + strand, within Atu0643 at 630.512 kb on + strand, within Atu0643 at 630.592 kb on - strand, within Atu0643 at 630.631 kb on - strand, within Atu0643 at 630.632 kb on - strand, within Atu0643 at 630.632 kb on - strand, within Atu0643
Per-strain Table
Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C) remove 627,576 + +0.1 627,623 - +0.2 627,675 - -0.4 627,681 - -0.1 627,712 + +0.1 627,720 - -0.0 627,854 + Atu0641 0.14 -4.0 628,351 + -0.3 628,361 + -1.5 628,361 + -1.0 629,650 + +0.2 629,691 + +0.5 629,721 - +1.0 629,721 - -0.9 629,734 + +0.7 629,802 - +0.3 629,946 + Atu0643 0.13 -0.3 629,947 - Atu0643 0.13 +0.4 630,071 + Atu0643 0.19 -0.0 630,072 + Atu0643 0.19 -0.6 630,144 + Atu0643 0.23 -0.7 630,250 + Atu0643 0.28 +0.1 630,253 - Atu0643 0.29 -0.0 630,264 - Atu0643 0.29 -0.0 630,344 + Atu0643 0.33 +0.2 630,344 + Atu0643 0.33 -0.1 630,344 + Atu0643 0.33 -2.2 630,344 + Atu0643 0.33 +0.5 630,352 - Atu0643 0.34 -0.1 630,373 - Atu0643 0.35 +1.0 630,374 - Atu0643 0.35 +0.9 630,477 - Atu0643 0.40 +0.4 630,481 + Atu0643 0.40 +0.9 630,491 + Atu0643 0.41 +0.7 630,512 + Atu0643 0.42 -0.9 630,592 - Atu0643 0.46 -0.3 630,631 - Atu0643 0.48 -0.8 630,632 - Atu0643 0.48 -0.1 630,632 - Atu0643 0.48 +1.1
Or see this region's nucleotide sequence