Strain Fitness in Agrobacterium fabrum C58 around Atu6080

Experiment: Methyl alpha-D-glucopyranoside (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6079 and Atu6080 are separated by 171 nucleotidesAtu6080 and Atu6081 are separated by 81 nucleotidesAtu6081 and Atu6082 are separated by 198 nucleotides Atu6079: Atu6079 - putative nitrilotriacetate monooxygenase, at 94,522 to 95,814 Atu6079 Atu6080: Atu6080 - transcriptional regulator, LysR family, at 95,986 to 96,948 Atu6080 Atu6081: Atu6081 - conserved hypothetical protein, at 97,030 to 97,623 Atu6081 Atu6082: Atu6082 - AAA-family ATPase, at 97,822 to 98,859 Atu6082 Position (kb) 95 96 97Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 95.036 kb on - strand, within Atu6079at 95.045 kb on + strand, within Atu6079at 95.051 kb on + strand, within Atu6079at 95.059 kb on - strand, within Atu6079at 95.066 kb on + strand, within Atu6079at 95.096 kb on + strand, within Atu6079at 95.097 kb on + strand, within Atu6079at 95.108 kb on + strand, within Atu6079at 95.117 kb on + strand, within Atu6079at 95.125 kb on - strand, within Atu6079at 95.150 kb on - strand, within Atu6079at 95.178 kb on + strand, within Atu6079at 95.214 kb on - strand, within Atu6079at 95.230 kb on - strand, within Atu6079at 95.330 kb on - strand, within Atu6079at 95.331 kb on - strand, within Atu6079at 95.374 kb on + strand, within Atu6079at 95.382 kb on - strand, within Atu6079at 95.449 kb on + strand, within Atu6079at 95.457 kb on - strand, within Atu6079at 95.457 kb on - strand, within Atu6079at 95.457 kb on - strand, within Atu6079at 95.457 kb on - strand, within Atu6079at 95.535 kb on - strand, within Atu6079at 95.543 kb on - strand, within Atu6079at 95.550 kb on - strand, within Atu6079at 95.589 kb on + strand, within Atu6079at 95.645 kb on - strand, within Atu6079at 95.696 kb on + strandat 95.704 kb on - strandat 95.831 kb on + strandat 95.831 kb on + strandat 95.949 kb on - strandat 96.062 kb on - strandat 96.090 kb on + strand, within Atu6080at 96.090 kb on + strand, within Atu6080at 96.098 kb on - strand, within Atu6080at 96.098 kb on - strand, within Atu6080at 96.125 kb on + strand, within Atu6080at 96.234 kb on + strand, within Atu6080at 96.269 kb on + strand, within Atu6080at 96.389 kb on + strand, within Atu6080at 96.399 kb on + strand, within Atu6080at 96.399 kb on + strand, within Atu6080at 96.422 kb on + strand, within Atu6080at 96.422 kb on + strand, within Atu6080at 96.422 kb on + strand, within Atu6080at 96.495 kb on - strand, within Atu6080at 96.527 kb on + strand, within Atu6080at 96.550 kb on + strand, within Atu6080at 96.591 kb on + strand, within Atu6080at 96.592 kb on + strand, within Atu6080at 96.627 kb on - strand, within Atu6080at 96.634 kb on - strand, within Atu6080at 96.637 kb on + strand, within Atu6080at 96.686 kb on - strand, within Atu6080at 96.703 kb on + strand, within Atu6080at 96.703 kb on + strand, within Atu6080at 96.703 kb on + strand, within Atu6080at 96.709 kb on + strand, within Atu6080at 96.710 kb on - strand, within Atu6080at 96.711 kb on - strand, within Atu6080at 96.711 kb on - strand, within Atu6080at 96.711 kb on - strand, within Atu6080at 96.717 kb on - strand, within Atu6080at 96.759 kb on + strand, within Atu6080at 96.793 kb on - strand, within Atu6080at 96.793 kb on - strand, within Atu6080at 96.815 kb on - strand, within Atu6080at 96.845 kb on + strand, within Atu6080at 97.015 kb on + strandat 97.015 kb on + strandat 97.053 kb on + strandat 97.105 kb on + strand, within Atu6081at 97.168 kb on + strand, within Atu6081at 97.217 kb on + strand, within Atu6081at 97.217 kb on + strand, within Atu6081at 97.230 kb on + strand, within Atu6081at 97.264 kb on + strand, within Atu6081at 97.303 kb on - strand, within Atu6081at 97.303 kb on - strand, within Atu6081at 97.309 kb on + strand, within Atu6081at 97.322 kb on - strand, within Atu6081at 97.332 kb on - strand, within Atu6081at 97.332 kb on - strand, within Atu6081at 97.379 kb on + strand, within Atu6081at 97.379 kb on + strand, within Atu6081at 97.387 kb on - strand, within Atu6081at 97.397 kb on - strand, within Atu6081at 97.410 kb on + strand, within Atu6081at 97.427 kb on + strand, within Atu6081at 97.430 kb on - strand, within Atu6081at 97.447 kb on - strand, within Atu6081at 97.461 kb on + strand, within Atu6081at 97.469 kb on - strand, within Atu6081at 97.497 kb on - strand, within Atu6081at 97.538 kb on + strand, within Atu6081at 97.566 kb on + strandat 97.571 kb on + strandat 97.581 kb on + strandat 97.595 kb on + strandat 97.684 kb on + strandat 97.692 kb on + strandat 97.692 kb on + strandat 97.700 kb on - strandat 97.700 kb on - strandat 97.827 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methyl alpha-D-glucopyranoside (C)
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95,036 - Atu6079 0.40 +0.3
95,045 + Atu6079 0.40 +0.8
95,051 + Atu6079 0.41 +0.0
95,059 - Atu6079 0.42 +0.7
95,066 + Atu6079 0.42 -0.1
95,096 + Atu6079 0.44 +1.1
95,097 + Atu6079 0.44 +0.7
95,108 + Atu6079 0.45 +0.4
95,117 + Atu6079 0.46 +1.2
95,125 - Atu6079 0.47 +0.2
95,150 - Atu6079 0.49 -0.0
95,178 + Atu6079 0.51 +1.2
95,214 - Atu6079 0.54 +0.8
95,230 - Atu6079 0.55 -0.7
95,330 - Atu6079 0.62 +1.3
95,331 - Atu6079 0.63 +0.1
95,374 + Atu6079 0.66 +0.4
95,382 - Atu6079 0.67 +0.3
95,449 + Atu6079 0.72 +4.0
95,457 - Atu6079 0.72 -0.8
95,457 - Atu6079 0.72 -0.7
95,457 - Atu6079 0.72 -0.5
95,457 - Atu6079 0.72 +0.2
95,535 - Atu6079 0.78 +0.6
95,543 - Atu6079 0.79 -0.1
95,550 - Atu6079 0.80 +0.3
95,589 + Atu6079 0.83 +1.5
95,645 - Atu6079 0.87 -0.8
95,696 + +0.8
95,704 - +0.2
95,831 + +1.4
95,831 + -0.8
95,949 - -2.0
96,062 - +0.7
96,090 + Atu6080 0.11 +0.6
96,090 + Atu6080 0.11 -0.3
96,098 - Atu6080 0.12 -0.4
96,098 - Atu6080 0.12 -0.2
96,125 + Atu6080 0.14 +2.4
96,234 + Atu6080 0.26 +0.1
96,269 + Atu6080 0.29 -1.4
96,389 + Atu6080 0.42 +0.2
96,399 + Atu6080 0.43 -0.2
96,399 + Atu6080 0.43 -1.3
96,422 + Atu6080 0.45 -0.1
96,422 + Atu6080 0.45 +1.8
96,422 + Atu6080 0.45 +0.2
96,495 - Atu6080 0.53 +0.3
96,527 + Atu6080 0.56 +0.1
96,550 + Atu6080 0.59 -1.7
96,591 + Atu6080 0.63 -0.5
96,592 + Atu6080 0.63 +2.4
96,627 - Atu6080 0.67 +1.1
96,634 - Atu6080 0.67 -0.1
96,637 + Atu6080 0.68 -0.6
96,686 - Atu6080 0.73 +1.2
96,703 + Atu6080 0.74 +2.8
96,703 + Atu6080 0.74 -0.2
96,703 + Atu6080 0.74 +0.5
96,709 + Atu6080 0.75 +0.7
96,710 - Atu6080 0.75 +1.2
96,711 - Atu6080 0.75 -0.6
96,711 - Atu6080 0.75 +2.4
96,711 - Atu6080 0.75 +0.5
96,717 - Atu6080 0.76 +2.4
96,759 + Atu6080 0.80 +1.0
96,793 - Atu6080 0.84 +0.0
96,793 - Atu6080 0.84 +1.1
96,815 - Atu6080 0.86 +0.0
96,845 + Atu6080 0.89 -0.9
97,015 + -0.3
97,015 + +0.3
97,053 + -1.3
97,105 + Atu6081 0.13 +0.8
97,168 + Atu6081 0.23 +0.0
97,217 + Atu6081 0.31 -0.4
97,217 + Atu6081 0.31 -0.1
97,230 + Atu6081 0.34 +1.5
97,264 + Atu6081 0.39 -0.8
97,303 - Atu6081 0.46 -0.0
97,303 - Atu6081 0.46 +2.1
97,309 + Atu6081 0.47 -0.6
97,322 - Atu6081 0.49 +1.4
97,332 - Atu6081 0.51 -0.4
97,332 - Atu6081 0.51 +0.9
97,379 + Atu6081 0.59 -0.7
97,379 + Atu6081 0.59 -0.4
97,387 - Atu6081 0.60 +2.8
97,397 - Atu6081 0.62 +0.1
97,410 + Atu6081 0.64 -0.3
97,427 + Atu6081 0.67 +0.7
97,430 - Atu6081 0.67 -0.0
97,447 - Atu6081 0.70 -0.6
97,461 + Atu6081 0.73 +0.6
97,469 - Atu6081 0.74 +0.2
97,497 - Atu6081 0.79 +2.4
97,538 + Atu6081 0.86 -0.6
97,566 + -0.6
97,571 + -0.1
97,581 + +1.0
97,595 + +0.6
97,684 + -1.4
97,692 + +1.8
97,692 + -0.2
97,700 - -0.4
97,700 - -0.4
97,827 - +1.7

Or see this region's nucleotide sequence