Strain Fitness in Agrobacterium fabrum C58 around Atu6077

Experiment: Methyl alpha-D-glucopyranoside (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6075 and Atu6076 overlap by 1 nucleotidesAtu6076 and Atu6077 overlap by 19 nucleotidesAtu6077 and Atu6078 are separated by 10 nucleotides Atu6075: Atu6075 - ABC transporter, membrane spanning protein (peptide), at 89,877 to 90,818 Atu6075 Atu6076: Atu6076 - ABC transporter, membrane spanning protein (peptide), at 90,818 to 91,819 Atu6076 Atu6077: Atu6077 - monooxygenase, at 91,801 to 93,288 Atu6077 Atu6078: Atu6078 - conserved hypothetical protein, at 93,299 to 94,525 Atu6078 Position (kb) 91 92 93 94Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 90.821 kb on - strandat 90.857 kb on - strandat 90.860 kb on + strandat 90.902 kb on - strandat 90.904 kb on + strandat 90.945 kb on - strand, within Atu6076at 90.977 kb on + strand, within Atu6076at 90.978 kb on + strand, within Atu6076at 90.985 kb on - strand, within Atu6076at 91.059 kb on + strand, within Atu6076at 91.072 kb on - strand, within Atu6076at 91.105 kb on - strand, within Atu6076at 91.112 kb on - strand, within Atu6076at 91.112 kb on - strand, within Atu6076at 91.158 kb on - strand, within Atu6076at 91.163 kb on + strand, within Atu6076at 91.163 kb on + strand, within Atu6076at 91.171 kb on - strand, within Atu6076at 91.171 kb on - strand, within Atu6076at 91.193 kb on - strand, within Atu6076at 91.255 kb on + strand, within Atu6076at 91.292 kb on - strand, within Atu6076at 91.349 kb on + strand, within Atu6076at 91.359 kb on + strand, within Atu6076at 91.359 kb on + strand, within Atu6076at 91.367 kb on - strand, within Atu6076at 91.367 kb on - strand, within Atu6076at 91.367 kb on - strand, within Atu6076at 91.367 kb on - strand, within Atu6076at 91.447 kb on + strand, within Atu6076at 91.521 kb on - strand, within Atu6076at 91.567 kb on + strand, within Atu6076at 91.580 kb on - strand, within Atu6076at 91.760 kb on - strandat 91.766 kb on + strandat 91.766 kb on + strandat 91.797 kb on - strandat 91.809 kb on - strandat 91.829 kb on - strandat 91.906 kb on + strandat 91.914 kb on - strandat 91.914 kb on - strandat 91.914 kb on - strandat 91.971 kb on - strand, within Atu6077at 92.008 kb on + strand, within Atu6077at 92.008 kb on + strand, within Atu6077at 92.008 kb on + strand, within Atu6077at 92.016 kb on - strand, within Atu6077at 92.016 kb on - strand, within Atu6077at 92.016 kb on - strand, within Atu6077at 92.016 kb on - strand, within Atu6077at 92.016 kb on - strand, within Atu6077at 92.016 kb on - strand, within Atu6077at 92.017 kb on - strand, within Atu6077at 92.024 kb on + strand, within Atu6077at 92.025 kb on + strand, within Atu6077at 92.032 kb on - strand, within Atu6077at 92.033 kb on - strand, within Atu6077at 92.048 kb on + strand, within Atu6077at 92.057 kb on - strand, within Atu6077at 92.074 kb on + strand, within Atu6077at 92.172 kb on - strand, within Atu6077at 92.221 kb on + strand, within Atu6077at 92.281 kb on - strand, within Atu6077at 92.329 kb on + strand, within Atu6077at 92.337 kb on - strand, within Atu6077at 92.348 kb on - strand, within Atu6077at 92.357 kb on + strand, within Atu6077at 92.514 kb on + strand, within Atu6077at 92.568 kb on - strand, within Atu6077at 92.579 kb on - strand, within Atu6077at 92.624 kb on - strand, within Atu6077at 92.666 kb on - strand, within Atu6077at 92.666 kb on - strand, within Atu6077at 92.666 kb on - strand, within Atu6077at 92.667 kb on - strand, within Atu6077at 92.667 kb on - strand, within Atu6077at 92.667 kb on - strand, within Atu6077at 92.680 kb on + strand, within Atu6077at 92.737 kb on - strand, within Atu6077at 92.776 kb on + strand, within Atu6077at 92.864 kb on - strand, within Atu6077at 92.870 kb on + strand, within Atu6077at 92.887 kb on - strand, within Atu6077at 92.919 kb on + strand, within Atu6077at 92.921 kb on + strand, within Atu6077at 92.943 kb on + strand, within Atu6077at 92.943 kb on + strand, within Atu6077at 92.943 kb on + strand, within Atu6077at 92.943 kb on + strand, within Atu6077at 92.948 kb on + strand, within Atu6077at 92.966 kb on - strand, within Atu6077at 92.968 kb on + strand, within Atu6077at 92.982 kb on - strand, within Atu6077at 93.012 kb on - strand, within Atu6077at 93.072 kb on + strand, within Atu6077at 93.079 kb on + strand, within Atu6077at 93.084 kb on + strand, within Atu6077at 93.084 kb on + strand, within Atu6077at 93.093 kb on - strand, within Atu6077at 93.101 kb on + strand, within Atu6077at 93.106 kb on + strand, within Atu6077at 93.106 kb on + strand, within Atu6077at 93.119 kb on - strand, within Atu6077at 93.133 kb on + strand, within Atu6077at 93.133 kb on + strand, within Atu6077at 93.141 kb on - strandat 93.146 kb on - strandat 93.153 kb on + strandat 93.153 kb on + strandat 93.158 kb on + strandat 93.161 kb on - strandat 93.162 kb on + strandat 93.162 kb on + strandat 93.166 kb on - strandat 93.204 kb on + strandat 93.204 kb on + strandat 93.210 kb on - strandat 93.210 kb on - strandat 93.227 kb on - strandat 93.262 kb on - strandat 93.297 kb on + strandat 93.385 kb on + strandat 93.401 kb on - strandat 93.424 kb on + strand, within Atu6078at 93.427 kb on + strand, within Atu6078at 93.432 kb on - strand, within Atu6078at 93.437 kb on + strand, within Atu6078at 93.513 kb on + strand, within Atu6078at 93.513 kb on + strand, within Atu6078at 93.518 kb on + strand, within Atu6078at 93.567 kb on + strand, within Atu6078at 93.569 kb on + strand, within Atu6078at 93.593 kb on - strand, within Atu6078at 93.598 kb on - strand, within Atu6078at 93.730 kb on - strand, within Atu6078at 93.815 kb on - strand, within Atu6078at 93.823 kb on - strand, within Atu6078at 93.845 kb on + strand, within Atu6078at 93.845 kb on + strand, within Atu6078at 93.853 kb on + strand, within Atu6078at 93.853 kb on - strand, within Atu6078at 93.853 kb on - strand, within Atu6078at 93.882 kb on + strand, within Atu6078at 93.931 kb on - strand, within Atu6078at 93.951 kb on + strand, within Atu6078at 93.981 kb on + strand, within Atu6078at 94.131 kb on + strand, within Atu6078at 94.139 kb on - strand, within Atu6078at 94.139 kb on - strand, within Atu6078at 94.141 kb on + strand, within Atu6078at 94.142 kb on + strand, within Atu6078at 94.149 kb on - strand, within Atu6078at 94.150 kb on - strand, within Atu6078at 94.210 kb on + strand, within Atu6078at 94.211 kb on + strand, within Atu6078at 94.221 kb on + strand, within Atu6078at 94.226 kb on + strand, within Atu6078at 94.231 kb on + strand, within Atu6078at 94.234 kb on - strand, within Atu6078at 94.260 kb on + strand, within Atu6078at 94.270 kb on + strand, within Atu6078at 94.278 kb on - strand, within Atu6078

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Per-strain Table

Position Strand Gene LocusTag Fraction Methyl alpha-D-glucopyranoside (C)
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90,821 - +0.2
90,857 - -1.8
90,860 + +3.0
90,902 - +2.2
90,904 + -0.1
90,945 - Atu6076 0.13 -0.5
90,977 + Atu6076 0.16 +0.6
90,978 + Atu6076 0.16 +0.4
90,985 - Atu6076 0.17 +1.5
91,059 + Atu6076 0.24 +0.4
91,072 - Atu6076 0.25 -0.2
91,105 - Atu6076 0.29 -0.5
91,112 - Atu6076 0.29 -1.0
91,112 - Atu6076 0.29 +0.2
91,158 - Atu6076 0.34 -1.1
91,163 + Atu6076 0.34 +0.1
91,163 + Atu6076 0.34 +1.7
91,171 - Atu6076 0.35 +0.0
91,171 - Atu6076 0.35 -0.2
91,193 - Atu6076 0.37 +1.1
91,255 + Atu6076 0.44 -0.0
91,292 - Atu6076 0.47 +1.2
91,349 + Atu6076 0.53 +0.6
91,359 + Atu6076 0.54 -0.1
91,359 + Atu6076 0.54 -0.0
91,367 - Atu6076 0.55 +2.2
91,367 - Atu6076 0.55 +0.0
91,367 - Atu6076 0.55 -0.3
91,367 - Atu6076 0.55 -0.8
91,447 + Atu6076 0.63 +0.6
91,521 - Atu6076 0.70 -0.8
91,567 + Atu6076 0.75 -0.0
91,580 - Atu6076 0.76 -0.7
91,760 - -0.8
91,766 + -0.9
91,766 + +0.0
91,797 - +2.1
91,809 - +0.6
91,829 - -0.3
91,906 + +1.5
91,914 - +0.3
91,914 - +0.1
91,914 - -0.7
91,971 - Atu6077 0.11 +0.4
92,008 + Atu6077 0.14 +1.2
92,008 + Atu6077 0.14 -0.1
92,008 + Atu6077 0.14 -0.4
92,016 - Atu6077 0.14 +0.8
92,016 - Atu6077 0.14 -0.7
92,016 - Atu6077 0.14 -1.2
92,016 - Atu6077 0.14 +0.5
92,016 - Atu6077 0.14 -0.0
92,016 - Atu6077 0.14 +0.1
92,017 - Atu6077 0.15 -0.5
92,024 + Atu6077 0.15 -0.0
92,025 + Atu6077 0.15 -3.8
92,032 - Atu6077 0.16 +0.2
92,033 - Atu6077 0.16 -0.8
92,048 + Atu6077 0.17 +1.4
92,057 - Atu6077 0.17 +0.2
92,074 + Atu6077 0.18 +0.6
92,172 - Atu6077 0.25 +2.8
92,221 + Atu6077 0.28 -0.2
92,281 - Atu6077 0.32 +0.4
92,329 + Atu6077 0.35 +0.3
92,337 - Atu6077 0.36 -1.0
92,348 - Atu6077 0.37 +0.6
92,357 + Atu6077 0.37 +1.0
92,514 + Atu6077 0.48 +1.0
92,568 - Atu6077 0.52 -0.0
92,579 - Atu6077 0.52 +0.5
92,624 - Atu6077 0.55 -0.8
92,666 - Atu6077 0.58 +0.0
92,666 - Atu6077 0.58 +0.1
92,666 - Atu6077 0.58 +0.7
92,667 - Atu6077 0.58 -1.7
92,667 - Atu6077 0.58 -0.1
92,667 - Atu6077 0.58 +3.4
92,680 + Atu6077 0.59 -0.0
92,737 - Atu6077 0.63 +0.5
92,776 + Atu6077 0.66 +0.1
92,864 - Atu6077 0.71 +1.0
92,870 + Atu6077 0.72 -1.3
92,887 - Atu6077 0.73 +2.0
92,919 + Atu6077 0.75 -2.3
92,921 + Atu6077 0.75 +1.2
92,943 + Atu6077 0.77 -1.2
92,943 + Atu6077 0.77 -0.3
92,943 + Atu6077 0.77 +0.3
92,943 + Atu6077 0.77 +1.1
92,948 + Atu6077 0.77 +0.6
92,966 - Atu6077 0.78 +1.1
92,968 + Atu6077 0.78 -1.0
92,982 - Atu6077 0.79 -0.6
93,012 - Atu6077 0.81 -0.7
93,072 + Atu6077 0.85 +1.0
93,079 + Atu6077 0.86 -0.1
93,084 + Atu6077 0.86 -0.6
93,084 + Atu6077 0.86 -0.3
93,093 - Atu6077 0.87 +1.1
93,101 + Atu6077 0.87 +0.8
93,106 + Atu6077 0.88 -0.7
93,106 + Atu6077 0.88 -0.8
93,119 - Atu6077 0.89 -0.2
93,133 + Atu6077 0.90 +1.4
93,133 + Atu6077 0.90 +0.8
93,141 - -0.4
93,146 - +0.5
93,153 + +0.9
93,153 + +2.1
93,158 + +0.5
93,161 - -0.9
93,162 + +0.4
93,162 + +2.4
93,166 - -0.3
93,204 + +1.3
93,204 + -0.1
93,210 - +0.1
93,210 - +1.1
93,227 - +0.0
93,262 - -1.4
93,297 + -0.0
93,385 + -0.9
93,401 - -0.7
93,424 + Atu6078 0.10 +0.3
93,427 + Atu6078 0.10 -0.2
93,432 - Atu6078 0.11 -0.6
93,437 + Atu6078 0.11 +0.5
93,513 + Atu6078 0.17 +0.5
93,513 + Atu6078 0.17 +0.2
93,518 + Atu6078 0.18 +1.6
93,567 + Atu6078 0.22 -0.2
93,569 + Atu6078 0.22 +0.0
93,593 - Atu6078 0.24 +0.7
93,598 - Atu6078 0.24 +1.4
93,730 - Atu6078 0.35 +0.6
93,815 - Atu6078 0.42 -0.2
93,823 - Atu6078 0.43 -0.2
93,845 + Atu6078 0.44 -0.2
93,845 + Atu6078 0.44 +0.9
93,853 + Atu6078 0.45 +0.0
93,853 - Atu6078 0.45 -0.3
93,853 - Atu6078 0.45 +4.6
93,882 + Atu6078 0.48 +0.3
93,931 - Atu6078 0.52 +0.3
93,951 + Atu6078 0.53 +0.3
93,981 + Atu6078 0.56 +2.4
94,131 + Atu6078 0.68 -0.8
94,139 - Atu6078 0.68 +0.1
94,139 - Atu6078 0.68 +0.3
94,141 + Atu6078 0.69 -0.4
94,142 + Atu6078 0.69 +1.4
94,149 - Atu6078 0.69 -0.6
94,150 - Atu6078 0.69 +0.4
94,210 + Atu6078 0.74 -1.1
94,211 + Atu6078 0.74 +0.3
94,221 + Atu6078 0.75 -0.4
94,226 + Atu6078 0.76 -0.6
94,231 + Atu6078 0.76 +0.4
94,234 - Atu6078 0.76 -0.3
94,260 + Atu6078 0.78 +0.4
94,270 + Atu6078 0.79 +0.2
94,278 - Atu6078 0.80 +0.5

Or see this region's nucleotide sequence