Experiment: Xylobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0784 and Atu0785 overlap by 4 nucleotides Atu0785 and Atu0786 are separated by 93 nucleotides Atu0786 and Atu0787 are separated by 21 nucleotides
Atu0784: Atu0784 - hypothetical protein, at 779,594 to 782,509
Atu0784
Atu0785: Atu0785 - ribosomal-protein (S5)-alanine N-acetyltransferase, at 782,506 to 783,105
Atu0785
Atu0786: Atu0786 - peptidase, family M16, at 783,199 to 784,497
Atu0786
Atu0787: Atu0787 - threonine synthase, at 784,519 to 786,090
Atu0787
Position (kb) 783
784
785 Strain fitness (log2 ratio) -2
-1
0
1
2 at 782.518 kb on - strand at 782.757 kb on - strand, within Atu0785 at 782.779 kb on - strand, within Atu0785 at 782.794 kb on + strand, within Atu0785 at 782.797 kb on - strand, within Atu0785 at 782.802 kb on - strand, within Atu0785 at 783.046 kb on - strand at 783.051 kb on + strand at 783.064 kb on - strand at 783.066 kb on + strand at 783.125 kb on - strand at 783.210 kb on + strand at 783.210 kb on + strand at 783.337 kb on + strand, within Atu0786 at 783.682 kb on - strand, within Atu0786 at 783.860 kb on - strand, within Atu0786 at 784.187 kb on - strand, within Atu0786 at 784.212 kb on - strand, within Atu0786 at 784.244 kb on - strand, within Atu0786 at 784.341 kb on - strand, within Atu0786 at 784.485 kb on + strand at 784.491 kb on + strand at 784.493 kb on - strand at 784.493 kb on - strand at 784.493 kb on - strand at 784.493 kb on - strand at 784.505 kb on - strand at 784.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylobiose (C) remove 782,518 - -0.3 782,757 - Atu0785 0.42 +0.2 782,779 - Atu0785 0.46 +0.1 782,794 + Atu0785 0.48 -0.4 782,797 - Atu0785 0.48 -0.4 782,802 - Atu0785 0.49 -0.7 783,046 - +2.3 783,051 + -0.2 783,064 - -0.1 783,066 + +0.3 783,125 - -0.1 783,210 + -0.4 783,210 + +0.0 783,337 + Atu0786 0.11 -1.0 783,682 - Atu0786 0.37 -0.7 783,860 - Atu0786 0.51 -1.7 784,187 - Atu0786 0.76 -0.2 784,212 - Atu0786 0.78 -2.4 784,244 - Atu0786 0.80 -0.4 784,341 - Atu0786 0.88 -2.1 784,485 + -1.6 784,491 + -0.3 784,493 - -0.4 784,493 - -0.2 784,493 - -0.1 784,493 - -0.3 784,505 - -0.5 784,527 - -0.0
Or see this region's nucleotide sequence