Strain Fitness in Agrobacterium fabrum C58 around Atu5128

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5126 and Atu5127 overlap by 4 nucleotidesAtu5127 and Atu5128 overlap by 11 nucleotidesAtu5128 and Atu5129 are separated by 27 nucleotides Atu5126: Atu5126 - ABC transporter nucleotide binding/ATPase(putrescine), at 133,260 to 134,372 Atu5126 Atu5127: Atu5127 - ABC transporter membrane spanning protein (mannopine), at 134,369 to 135,271 Atu5127 Atu5128: Atu5128 - ABC transporter membrane spanning protein (mannopine), at 135,261 to 136,118 Atu5128 Atu5129: Atu5129 - ABC transporter substrate binding protein (mannopine), at 136,146 to 137,228 Atu5129 Position (kb) 135 136 137Strain fitness (log2 ratio) -1 0 1 2at 134.367 kb on - strandat 134.443 kb on + strandat 134.547 kb on - strand, within Atu5127at 134.556 kb on + strand, within Atu5127at 134.564 kb on - strand, within Atu5127at 134.572 kb on - strand, within Atu5127at 134.574 kb on - strand, within Atu5127at 134.616 kb on - strand, within Atu5127at 134.621 kb on + strand, within Atu5127at 134.654 kb on + strand, within Atu5127at 134.662 kb on - strand, within Atu5127at 134.688 kb on + strand, within Atu5127at 134.698 kb on + strand, within Atu5127at 134.698 kb on + strand, within Atu5127at 134.706 kb on - strand, within Atu5127at 134.706 kb on - strand, within Atu5127at 134.706 kb on - strand, within Atu5127at 134.737 kb on + strand, within Atu5127at 134.745 kb on + strand, within Atu5127at 134.750 kb on + strand, within Atu5127at 134.750 kb on + strand, within Atu5127at 134.750 kb on - strand, within Atu5127at 134.758 kb on - strand, within Atu5127at 134.782 kb on + strand, within Atu5127at 134.790 kb on - strand, within Atu5127at 134.824 kb on - strand, within Atu5127at 134.835 kb on - strand, within Atu5127at 134.851 kb on + strand, within Atu5127at 134.859 kb on - strand, within Atu5127at 134.859 kb on - strand, within Atu5127at 134.871 kb on - strand, within Atu5127at 134.894 kb on - strand, within Atu5127at 134.994 kb on + strand, within Atu5127at 135.083 kb on + strand, within Atu5127at 135.102 kb on - strand, within Atu5127at 135.102 kb on - strand, within Atu5127at 135.107 kb on - strand, within Atu5127at 135.139 kb on + strand, within Atu5127at 135.139 kb on + strand, within Atu5127at 135.142 kb on + strand, within Atu5127at 135.147 kb on - strand, within Atu5127at 135.157 kb on - strand, within Atu5127at 135.165 kb on - strand, within Atu5127at 135.179 kb on + strand, within Atu5127at 135.187 kb on - strandat 135.194 kb on - strandat 135.251 kb on + strandat 135.251 kb on + strandat 135.251 kb on + strandat 135.256 kb on + strandat 135.259 kb on - strandat 135.259 kb on - strandat 135.314 kb on + strandat 135.322 kb on - strandat 135.323 kb on + strandat 135.350 kb on + strand, within Atu5128at 135.350 kb on + strand, within Atu5128at 135.350 kb on + strand, within Atu5128at 135.350 kb on + strand, within Atu5128at 135.350 kb on + strand, within Atu5128at 135.358 kb on - strand, within Atu5128at 135.358 kb on - strand, within Atu5128at 135.358 kb on - strand, within Atu5128at 135.358 kb on - strand, within Atu5128at 135.358 kb on - strand, within Atu5128at 135.401 kb on + strand, within Atu5128at 135.417 kb on + strand, within Atu5128at 135.425 kb on - strand, within Atu5128at 135.427 kb on + strand, within Atu5128at 135.459 kb on + strand, within Atu5128at 135.467 kb on - strand, within Atu5128at 135.481 kb on + strand, within Atu5128at 135.637 kb on + strand, within Atu5128at 135.637 kb on + strand, within Atu5128at 135.645 kb on - strand, within Atu5128at 135.645 kb on - strand, within Atu5128at 135.651 kb on - strand, within Atu5128at 135.672 kb on + strand, within Atu5128at 135.680 kb on - strand, within Atu5128at 135.702 kb on + strand, within Atu5128at 135.720 kb on - strand, within Atu5128at 135.746 kb on - strand, within Atu5128at 135.753 kb on + strand, within Atu5128at 135.753 kb on + strand, within Atu5128at 135.753 kb on + strand, within Atu5128at 135.753 kb on + strand, within Atu5128at 135.753 kb on + strand, within Atu5128at 135.753 kb on + strand, within Atu5128at 135.755 kb on - strand, within Atu5128at 135.761 kb on - strand, within Atu5128at 135.761 kb on - strand, within Atu5128at 135.761 kb on - strand, within Atu5128at 135.787 kb on + strand, within Atu5128at 135.787 kb on + strand, within Atu5128at 135.787 kb on + strand, within Atu5128at 135.795 kb on + strand, within Atu5128at 135.802 kb on + strand, within Atu5128at 135.828 kb on + strand, within Atu5128at 135.836 kb on - strand, within Atu5128at 135.886 kb on - strand, within Atu5128at 135.886 kb on - strand, within Atu5128at 136.076 kb on + strandat 136.099 kb on - strandat 136.100 kb on - strandat 136.109 kb on - strandat 136.119 kb on + strandat 136.119 kb on - strandat 136.119 kb on - strandat 136.121 kb on - strandat 136.153 kb on + strandat 136.207 kb on + strandat 136.225 kb on + strandat 136.310 kb on - strand, within Atu5129at 136.320 kb on - strand, within Atu5129at 136.321 kb on - strand, within Atu5129at 136.371 kb on + strand, within Atu5129at 136.393 kb on + strand, within Atu5129at 136.418 kb on - strand, within Atu5129at 136.428 kb on - strand, within Atu5129at 136.475 kb on - strand, within Atu5129at 136.480 kb on + strand, within Atu5129at 136.487 kb on - strand, within Atu5129at 136.527 kb on - strand, within Atu5129at 136.535 kb on - strand, within Atu5129at 136.580 kb on - strand, within Atu5129at 136.630 kb on - strand, within Atu5129at 136.698 kb on + strand, within Atu5129at 136.706 kb on - strand, within Atu5129at 136.710 kb on + strand, within Atu5129at 136.710 kb on + strand, within Atu5129at 136.792 kb on + strand, within Atu5129at 136.796 kb on - strand, within Atu5129at 136.798 kb on + strand, within Atu5129at 136.798 kb on + strand, within Atu5129at 136.798 kb on + strand, within Atu5129at 136.798 kb on + strand, within Atu5129at 136.798 kb on + strand, within Atu5129at 136.806 kb on + strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.883 kb on - strand, within Atu5129at 136.900 kb on - strand, within Atu5129at 137.039 kb on + strand, within Atu5129at 137.042 kb on - strand, within Atu5129at 137.047 kb on - strand, within Atu5129at 137.055 kb on + strand, within Atu5129at 137.078 kb on - strand, within Atu5129at 137.118 kb on + strand, within Atu5129

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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134,367 - +0.4
134,443 + +0.1
134,547 - Atu5127 0.20 +1.3
134,556 + Atu5127 0.21 -0.7
134,564 - Atu5127 0.22 -0.8
134,572 - Atu5127 0.22 +0.5
134,574 - Atu5127 0.23 +0.7
134,616 - Atu5127 0.27 -0.0
134,621 + Atu5127 0.28 +0.1
134,654 + Atu5127 0.32 -0.1
134,662 - Atu5127 0.32 +0.4
134,688 + Atu5127 0.35 +0.7
134,698 + Atu5127 0.36 -1.6
134,698 + Atu5127 0.36 +0.0
134,706 - Atu5127 0.37 +1.9
134,706 - Atu5127 0.37 +0.5
134,706 - Atu5127 0.37 +0.5
134,737 + Atu5127 0.41 -0.1
134,745 + Atu5127 0.42 +1.5
134,750 + Atu5127 0.42 -0.0
134,750 + Atu5127 0.42 +1.4
134,750 - Atu5127 0.42 +0.2
134,758 - Atu5127 0.43 +0.0
134,782 + Atu5127 0.46 +0.6
134,790 - Atu5127 0.47 -0.3
134,824 - Atu5127 0.50 +0.7
134,835 - Atu5127 0.52 -0.7
134,851 + Atu5127 0.53 -1.4
134,859 - Atu5127 0.54 -0.6
134,859 - Atu5127 0.54 -0.9
134,871 - Atu5127 0.56 -1.5
134,894 - Atu5127 0.58 -0.4
134,994 + Atu5127 0.69 -0.3
135,083 + Atu5127 0.79 +0.1
135,102 - Atu5127 0.81 +1.3
135,102 - Atu5127 0.81 +0.5
135,107 - Atu5127 0.82 +0.1
135,139 + Atu5127 0.85 -0.7
135,139 + Atu5127 0.85 +0.3
135,142 + Atu5127 0.86 +0.8
135,147 - Atu5127 0.86 +1.7
135,157 - Atu5127 0.87 -0.8
135,165 - Atu5127 0.88 -0.1
135,179 + Atu5127 0.90 -1.0
135,187 - -0.2
135,194 - -0.1
135,251 + +1.1
135,251 + -0.3
135,251 + +0.1
135,256 + +0.1
135,259 - +0.4
135,259 - +0.9
135,314 + -0.1
135,322 - -0.4
135,323 + -0.2
135,350 + Atu5128 0.10 +1.7
135,350 + Atu5128 0.10 +0.5
135,350 + Atu5128 0.10 +0.4
135,350 + Atu5128 0.10 +0.6
135,350 + Atu5128 0.10 +0.6
135,358 - Atu5128 0.11 +0.3
135,358 - Atu5128 0.11 +0.2
135,358 - Atu5128 0.11 +0.9
135,358 - Atu5128 0.11 -0.0
135,358 - Atu5128 0.11 +0.3
135,401 + Atu5128 0.16 +0.8
135,417 + Atu5128 0.18 -1.7
135,425 - Atu5128 0.19 -0.2
135,427 + Atu5128 0.19 -0.2
135,459 + Atu5128 0.23 -0.0
135,467 - Atu5128 0.24 +0.3
135,481 + Atu5128 0.26 -0.1
135,637 + Atu5128 0.44 -0.9
135,637 + Atu5128 0.44 +0.7
135,645 - Atu5128 0.45 +0.3
135,645 - Atu5128 0.45 +1.8
135,651 - Atu5128 0.45 +0.2
135,672 + Atu5128 0.48 -0.3
135,680 - Atu5128 0.49 +1.4
135,702 + Atu5128 0.51 +0.2
135,720 - Atu5128 0.53 +0.5
135,746 - Atu5128 0.57 +0.1
135,753 + Atu5128 0.57 +0.1
135,753 + Atu5128 0.57 +1.7
135,753 + Atu5128 0.57 +0.4
135,753 + Atu5128 0.57 +0.4
135,753 + Atu5128 0.57 -0.3
135,753 + Atu5128 0.57 -0.0
135,755 - Atu5128 0.58 +0.5
135,761 - Atu5128 0.58 -0.5
135,761 - Atu5128 0.58 +0.5
135,761 - Atu5128 0.58 +0.1
135,787 + Atu5128 0.61 +0.9
135,787 + Atu5128 0.61 +0.8
135,787 + Atu5128 0.61 -0.8
135,795 + Atu5128 0.62 -0.0
135,802 + Atu5128 0.63 -0.1
135,828 + Atu5128 0.66 -0.6
135,836 - Atu5128 0.67 +0.1
135,886 - Atu5128 0.73 +0.3
135,886 - Atu5128 0.73 +0.3
136,076 + +0.1
136,099 - +0.5
136,100 - +0.8
136,109 - -0.0
136,119 + +0.4
136,119 - +1.3
136,119 - +1.1
136,121 - +0.3
136,153 + +0.3
136,207 + -0.5
136,225 + -1.6
136,310 - Atu5129 0.15 +1.4
136,320 - Atu5129 0.16 +0.8
136,321 - Atu5129 0.16 +0.7
136,371 + Atu5129 0.21 +0.3
136,393 + Atu5129 0.23 +0.6
136,418 - Atu5129 0.25 +0.3
136,428 - Atu5129 0.26 -0.9
136,475 - Atu5129 0.30 -0.9
136,480 + Atu5129 0.31 -0.6
136,487 - Atu5129 0.31 -0.6
136,527 - Atu5129 0.35 +0.8
136,535 - Atu5129 0.36 +0.1
136,580 - Atu5129 0.40 -0.3
136,630 - Atu5129 0.45 +0.1
136,698 + Atu5129 0.51 +0.0
136,706 - Atu5129 0.52 +0.9
136,710 + Atu5129 0.52 +0.2
136,710 + Atu5129 0.52 -0.4
136,792 + Atu5129 0.60 +0.3
136,796 - Atu5129 0.60 +0.7
136,798 + Atu5129 0.60 +0.1
136,798 + Atu5129 0.60 +0.8
136,798 + Atu5129 0.60 +0.3
136,798 + Atu5129 0.60 -0.1
136,798 + Atu5129 0.60 -1.3
136,806 + Atu5129 0.61 +0.5
136,806 - Atu5129 0.61 +0.8
136,806 - Atu5129 0.61 +0.3
136,806 - Atu5129 0.61 +0.3
136,806 - Atu5129 0.61 +1.7
136,806 - Atu5129 0.61 +0.1
136,806 - Atu5129 0.61 +0.7
136,806 - Atu5129 0.61 +0.2
136,806 - Atu5129 0.61 -0.4
136,806 - Atu5129 0.61 +0.3
136,806 - Atu5129 0.61 +0.3
136,806 - Atu5129 0.61 +1.7
136,883 - Atu5129 0.68 +0.2
136,900 - Atu5129 0.70 -0.2
137,039 + Atu5129 0.82 +0.8
137,042 - Atu5129 0.83 +0.4
137,047 - Atu5129 0.83 +0.7
137,055 + Atu5129 0.84 +0.4
137,078 - Atu5129 0.86 +0.2
137,118 + Atu5129 0.90 +0.8

Or see this region's nucleotide sequence