Strain Fitness in Agrobacterium fabrum C58 around Atu3844

Experiment: NAG (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu3843 and Atu3844 are separated by 51 nucleotidesAtu3844 and Atu3845 are separated by 72 nucleotidesAtu3845 and Atu3846 are separated by 20 nucleotides Atu3843: Atu3843 - hypothetical protein, at 937,437 to 938,579 Atu3843 Atu3844: Atu3844 - hypothetical protein, at 938,631 to 939,143 Atu3844 Atu3845: Atu3845 - hypothetical protein, at 939,216 to 939,896 Atu3845 Atu3846: Atu3846 - hypothetical protein, at 939,917 to 940,357 Atu3846 Position (kb) 938 939 940Strain fitness (log2 ratio) -2 -1 0 1 2at 937.631 kb on + strand, within Atu3843at 937.639 kb on - strand, within Atu3843at 937.639 kb on - strand, within Atu3843at 937.649 kb on - strand, within Atu3843at 937.652 kb on + strand, within Atu3843at 937.652 kb on + strand, within Atu3843at 937.652 kb on + strand, within Atu3843at 937.659 kb on + strand, within Atu3843at 937.660 kb on - strand, within Atu3843at 937.683 kb on - strand, within Atu3843at 937.685 kb on - strand, within Atu3843at 937.693 kb on + strand, within Atu3843at 937.693 kb on + strand, within Atu3843at 937.695 kb on + strand, within Atu3843at 937.701 kb on - strand, within Atu3843at 937.721 kb on + strand, within Atu3843at 937.721 kb on + strand, within Atu3843at 937.721 kb on + strand, within Atu3843at 937.721 kb on + strand, within Atu3843at 937.721 kb on + strand, within Atu3843at 937.729 kb on - strand, within Atu3843at 937.729 kb on - strand, within Atu3843at 937.734 kb on - strand, within Atu3843at 937.745 kb on - strand, within Atu3843at 937.824 kb on - strand, within Atu3843at 937.855 kb on + strand, within Atu3843at 937.881 kb on - strand, within Atu3843at 937.971 kb on - strand, within Atu3843at 937.971 kb on - strand, within Atu3843at 937.989 kb on + strand, within Atu3843at 937.997 kb on - strand, within Atu3843at 938.034 kb on - strand, within Atu3843at 938.039 kb on + strand, within Atu3843at 938.047 kb on - strand, within Atu3843at 938.047 kb on - strand, within Atu3843at 938.096 kb on + strand, within Atu3843at 938.104 kb on - strand, within Atu3843at 938.140 kb on - strand, within Atu3843at 938.236 kb on - strand, within Atu3843at 938.250 kb on + strand, within Atu3843at 938.312 kb on - strand, within Atu3843at 938.522 kb on - strandat 938.536 kb on + strandat 938.574 kb on + strandat 938.581 kb on - strandat 938.586 kb on + strandat 938.608 kb on - strandat 938.667 kb on + strandat 938.721 kb on + strand, within Atu3844at 938.721 kb on + strand, within Atu3844at 938.723 kb on - strand, within Atu3844at 938.728 kb on - strand, within Atu3844at 938.739 kb on + strand, within Atu3844at 938.742 kb on - strand, within Atu3844at 938.742 kb on - strand, within Atu3844at 938.747 kb on - strand, within Atu3844at 938.747 kb on - strand, within Atu3844at 938.791 kb on - strand, within Atu3844at 938.839 kb on + strand, within Atu3844at 938.985 kb on + strand, within Atu3844at 938.985 kb on + strand, within Atu3844at 939.023 kb on + strand, within Atu3844at 939.077 kb on + strand, within Atu3844at 939.154 kb on - strandat 939.215 kb on + strandat 939.226 kb on + strandat 939.226 kb on + strandat 939.266 kb on + strandat 939.266 kb on + strandat 939.268 kb on + strandat 939.268 kb on + strandat 939.369 kb on - strand, within Atu3845at 939.371 kb on + strand, within Atu3845at 939.371 kb on + strand, within Atu3845at 939.371 kb on + strand, within Atu3845at 939.379 kb on - strand, within Atu3845at 939.379 kb on - strand, within Atu3845at 939.408 kb on + strand, within Atu3845at 939.430 kb on + strand, within Atu3845at 939.469 kb on + strand, within Atu3845at 939.546 kb on - strand, within Atu3845at 939.560 kb on + strand, within Atu3845at 939.573 kb on - strand, within Atu3845at 939.578 kb on + strand, within Atu3845at 939.601 kb on + strand, within Atu3845at 939.623 kb on - strand, within Atu3845at 939.677 kb on + strand, within Atu3845at 939.691 kb on + strand, within Atu3845at 939.879 kb on + strandat 939.887 kb on - strandat 939.887 kb on - strandat 939.887 kb on - strandat 939.909 kb on - strandat 939.913 kb on - strandat 939.920 kb on + strandat 939.928 kb on + strandat 939.987 kb on + strand, within Atu3846at 939.995 kb on - strand, within Atu3846at 939.995 kb on - strand, within Atu3846at 940.067 kb on + strand, within Atu3846at 940.075 kb on - strand, within Atu3846at 940.077 kb on + strand, within Atu3846at 940.083 kb on - strand, within Atu3846

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
remove
937,631 + Atu3843 0.17 +0.2
937,639 - Atu3843 0.18 +0.1
937,639 - Atu3843 0.18 -0.3
937,649 - Atu3843 0.19 -1.2
937,652 + Atu3843 0.19 +0.7
937,652 + Atu3843 0.19 -0.0
937,652 + Atu3843 0.19 +0.2
937,659 + Atu3843 0.19 +0.2
937,660 - Atu3843 0.20 -1.2
937,683 - Atu3843 0.22 +0.5
937,685 - Atu3843 0.22 +0.2
937,693 + Atu3843 0.22 +0.0
937,693 + Atu3843 0.22 -0.2
937,695 + Atu3843 0.23 +0.1
937,701 - Atu3843 0.23 -0.9
937,721 + Atu3843 0.25 +1.2
937,721 + Atu3843 0.25 +0.4
937,721 + Atu3843 0.25 -0.1
937,721 + Atu3843 0.25 +0.1
937,721 + Atu3843 0.25 +0.6
937,729 - Atu3843 0.26 +0.4
937,729 - Atu3843 0.26 -0.8
937,734 - Atu3843 0.26 -0.0
937,745 - Atu3843 0.27 +2.2
937,824 - Atu3843 0.34 +0.6
937,855 + Atu3843 0.37 -0.2
937,881 - Atu3843 0.39 +0.1
937,971 - Atu3843 0.47 -0.6
937,971 - Atu3843 0.47 -0.1
937,989 + Atu3843 0.48 -0.2
937,997 - Atu3843 0.49 -2.5
938,034 - Atu3843 0.52 +0.0
938,039 + Atu3843 0.53 -0.0
938,047 - Atu3843 0.53 +0.8
938,047 - Atu3843 0.53 -0.2
938,096 + Atu3843 0.58 -0.2
938,104 - Atu3843 0.58 -0.5
938,140 - Atu3843 0.62 -0.2
938,236 - Atu3843 0.70 -0.8
938,250 + Atu3843 0.71 +0.2
938,312 - Atu3843 0.77 +1.5
938,522 - -0.6
938,536 + -0.8
938,574 + -0.3
938,581 - +0.7
938,586 + +0.9
938,608 - +0.2
938,667 + -0.0
938,721 + Atu3844 0.18 +0.5
938,721 + Atu3844 0.18 +0.7
938,723 - Atu3844 0.18 +0.9
938,728 - Atu3844 0.19 +0.3
938,739 + Atu3844 0.21 +0.2
938,742 - Atu3844 0.22 -0.0
938,742 - Atu3844 0.22 +0.2
938,747 - Atu3844 0.23 -0.8
938,747 - Atu3844 0.23 +0.1
938,791 - Atu3844 0.31 -0.0
938,839 + Atu3844 0.41 +0.9
938,985 + Atu3844 0.69 +0.3
938,985 + Atu3844 0.69 +0.7
939,023 + Atu3844 0.76 +0.5
939,077 + Atu3844 0.87 +1.5
939,154 - +0.7
939,215 + -0.1
939,226 + +0.0
939,226 + -0.3
939,266 + -0.3
939,266 + -0.6
939,268 + -0.4
939,268 + -1.4
939,369 - Atu3845 0.22 +0.7
939,371 + Atu3845 0.23 +0.8
939,371 + Atu3845 0.23 +0.7
939,371 + Atu3845 0.23 +0.5
939,379 - Atu3845 0.24 -0.3
939,379 - Atu3845 0.24 -0.2
939,408 + Atu3845 0.28 +0.0
939,430 + Atu3845 0.31 +0.1
939,469 + Atu3845 0.37 +0.5
939,546 - Atu3845 0.48 -1.2
939,560 + Atu3845 0.51 -1.3
939,573 - Atu3845 0.52 -0.3
939,578 + Atu3845 0.53 -0.1
939,601 + Atu3845 0.57 -0.2
939,623 - Atu3845 0.60 +0.0
939,677 + Atu3845 0.68 +0.3
939,691 + Atu3845 0.70 -0.9
939,879 + -0.4
939,887 - -0.0
939,887 - -0.2
939,887 - -0.2
939,909 - +0.3
939,913 - -0.2
939,920 + -1.2
939,928 + -0.6
939,987 + Atu3846 0.16 +0.1
939,995 - Atu3846 0.18 +0.1
939,995 - Atu3846 0.18 -0.3
940,067 + Atu3846 0.34 -0.3
940,075 - Atu3846 0.36 +0.0
940,077 + Atu3846 0.36 -0.3
940,083 - Atu3846 0.38 -0.1

Or see this region's nucleotide sequence