Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0626 and Atu0627 are separated by 118 nucleotides Atu0627 and Atu0628 are separated by 118 nucleotides
Atu0626: Atu0626 - alcohol dehydrogenase, at 614,537 to 615,565
Atu0626
Atu0627: Atu0627 - carboxymethylenebutenolidase, at 615,684 to 616,559
Atu0627
Atu0628: Atu0628 - two component sensor kinase, at 616,678 to 618,033
Atu0628
Position (kb) 615
616
617 Strain fitness (log2 ratio) -2
-1
0
1 at 614.775 kb on + strand, within Atu0626 at 614.783 kb on - strand, within Atu0626 at 614.809 kb on + strand, within Atu0626 at 614.809 kb on + strand, within Atu0626 at 614.809 kb on + strand, within Atu0626 at 614.809 kb on + strand, within Atu0626 at 614.817 kb on - strand, within Atu0626 at 614.817 kb on - strand, within Atu0626 at 614.828 kb on - strand, within Atu0626 at 614.867 kb on - strand, within Atu0626 at 614.904 kb on + strand, within Atu0626 at 615.005 kb on + strand, within Atu0626 at 615.015 kb on - strand, within Atu0626 at 615.015 kb on - strand, within Atu0626 at 615.103 kb on + strand, within Atu0626 at 615.261 kb on - strand, within Atu0626 at 615.286 kb on + strand, within Atu0626 at 615.286 kb on + strand, within Atu0626 at 615.294 kb on - strand, within Atu0626 at 615.294 kb on - strand, within Atu0626 at 615.371 kb on + strand, within Atu0626 at 615.377 kb on - strand, within Atu0626 at 615.379 kb on - strand, within Atu0626 at 615.641 kb on + strand at 615.692 kb on + strand at 615.896 kb on - strand, within Atu0627 at 616.103 kb on - strand, within Atu0627 at 616.180 kb on + strand, within Atu0627 at 616.249 kb on - strand, within Atu0627 at 616.249 kb on - strand, within Atu0627 at 616.373 kb on + strand, within Atu0627 at 616.607 kb on + strand at 616.629 kb on + strand at 616.637 kb on - strand at 616.654 kb on + strand at 616.751 kb on + strand at 616.776 kb on - strand at 616.787 kb on - strand at 616.787 kb on - strand at 616.787 kb on - strand at 616.863 kb on - strand, within Atu0628 at 616.964 kb on + strand, within Atu0628 at 616.964 kb on + strand, within Atu0628 at 616.964 kb on + strand, within Atu0628 at 616.972 kb on - strand, within Atu0628 at 616.972 kb on - strand, within Atu0628 at 617.052 kb on + strand, within Atu0628 at 617.052 kb on + strand, within Atu0628 at 617.087 kb on - strand, within Atu0628 at 617.087 kb on - strand, within Atu0628 at 617.141 kb on + strand, within Atu0628 at 617.141 kb on + strand, within Atu0628 at 617.141 kb on + strand, within Atu0628 at 617.149 kb on - strand, within Atu0628 at 617.303 kb on + strand, within Atu0628 at 617.311 kb on - strand, within Atu0628 at 617.327 kb on + strand, within Atu0628 at 617.373 kb on + strand, within Atu0628 at 617.500 kb on - strand, within Atu0628
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 614,775 + Atu0626 0.23 +0.3 614,783 - Atu0626 0.24 -0.2 614,809 + Atu0626 0.26 +0.3 614,809 + Atu0626 0.26 -0.2 614,809 + Atu0626 0.26 -0.8 614,809 + Atu0626 0.26 -0.2 614,817 - Atu0626 0.27 -0.9 614,817 - Atu0626 0.27 -0.4 614,828 - Atu0626 0.28 +0.3 614,867 - Atu0626 0.32 -0.2 614,904 + Atu0626 0.36 +0.1 615,005 + Atu0626 0.45 -1.6 615,015 - Atu0626 0.46 +0.1 615,015 - Atu0626 0.46 -0.1 615,103 + Atu0626 0.55 -0.1 615,261 - Atu0626 0.70 -0.4 615,286 + Atu0626 0.73 +0.5 615,286 + Atu0626 0.73 -0.1 615,294 - Atu0626 0.74 -0.2 615,294 - Atu0626 0.74 -0.5 615,371 + Atu0626 0.81 -0.2 615,377 - Atu0626 0.82 +0.1 615,379 - Atu0626 0.82 -1.3 615,641 + +0.3 615,692 + +0.7 615,896 - Atu0627 0.24 +0.3 616,103 - Atu0627 0.48 +0.2 616,180 + Atu0627 0.57 +0.5 616,249 - Atu0627 0.64 +0.4 616,249 - Atu0627 0.64 +0.5 616,373 + Atu0627 0.79 -0.3 616,607 + +1.2 616,629 + -0.1 616,637 - +0.1 616,654 + +0.6 616,751 + -0.9 616,776 - -0.5 616,787 - -1.7 616,787 - +0.8 616,787 - -0.2 616,863 - Atu0628 0.14 -2.3 616,964 + Atu0628 0.21 -0.0 616,964 + Atu0628 0.21 +0.1 616,964 + Atu0628 0.21 +0.3 616,972 - Atu0628 0.22 +0.6 616,972 - Atu0628 0.22 +0.6 617,052 + Atu0628 0.28 -0.1 617,052 + Atu0628 0.28 -0.5 617,087 - Atu0628 0.30 +0.8 617,087 - Atu0628 0.30 -0.0 617,141 + Atu0628 0.34 +0.8 617,141 + Atu0628 0.34 -0.1 617,141 + Atu0628 0.34 +0.3 617,149 - Atu0628 0.35 +0.1 617,303 + Atu0628 0.46 +0.0 617,311 - Atu0628 0.47 -0.2 617,327 + Atu0628 0.48 -0.1 617,373 + Atu0628 0.51 +0.1 617,500 - Atu0628 0.61 -0.1
Or see this region's nucleotide sequence