Strain Fitness in Agrobacterium fabrum C58 around Atu8202

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
2,063,664	+				+1.1
2,063,666	+				+0.6
2,063,674	-				+1.8
2,063,674	-				+0.8
2,063,712	+				+0.9
2,063,720	-				+0.7
2,063,742	-				+0.4
2,063,901	-		Atu4884	0.38	+1.6
2,063,911	+		Atu4884	0.40	+1.2
2,064,047	+		Atu4884	0.71	+1.5
2,064,047	+		Atu4884	0.71	+1.6
2,064,103	+		Atu4884	0.83	+1.7
2,064,139	+				+0.7
2,064,139	+				+1.1
2,064,139	+				+0.7
2,064,157	-				+0.9
2,064,170	+				+1.2
2,064,376	-				+1.1
2,064,403	+				+0.6
2,064,586	-		Atu8201	0.64	+1.4
2,064,586	-		Atu8201	0.64	+1.8
2,064,691	+		Atu8202	0.15	+0.5
2,064,691	+		Atu8202	0.15	+1.1
2,064,699	-		Atu8202	0.18	+1.4
2,064,699	-		Atu8202	0.18	+1.4
2,064,699	-		Atu8202	0.18	+1.2
2,064,699	-		Atu8202	0.18	+1.8
2,064,758	+		Atu8202	0.41	+1.0
2,064,780	+		Atu8202	0.49	+0.8
2,064,997	+		Atu4887	0.14	+0.9
2,065,002	+		Atu4887	0.15	+1.1
2,065,002	+		Atu4887	0.15	+0.9
2,065,010	-		Atu4887	0.17	+1.0
2,065,010	-		Atu4887	0.17	+1.0
2,065,110	+		Atu4887	0.46	+0.9
2,065,225	+		Atu4887	0.79	+0.8
2,065,291	-				+1.2
2,065,426	-				-1.0
2,065,475	+		Atu4888	0.13	+1.1
2,065,483	-		Atu4888	0.16	+1.0
2,065,483	-		Atu4888	0.16	+1.4
2,065,516	+		Atu4888	0.27	+1.5
2,065,524	-		Atu4888	0.30	+1.7
2,065,637	+		Atu4888	0.69	+1.9
2,065,669	+		Atu4888	0.80	+0.8
2,065,760	-				+0.8
2,065,762	+				+1.4
2,065,787	+				+0.5
2,065,808	+				+2.7
2,065,816	-				-1.2
2,065,826	+				+1.5
2,065,899	-		Atu4889	0.13	+1.6