Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3523 and Atu8188 are separated by 8 nucleotides Atu8188 and Atu3525 are separated by 52 nucleotides
Atu3523: Atu3523 - polysaccharide biosynthesis-like protein, at 572,347 to 573,762
Atu3523
Atu8188: Atu8188 - hypothetical protein, at 573,771 to 575,042
Atu8188
Atu3525: Atu3525 - hypothetical protein, at 575,095 to 575,757
Atu3525
Position (kb) 573
574
575
576 Strain fitness (log2 ratio) -2
-1
0
1
2 at 572.789 kb on + strand, within Atu3523 at 572.832 kb on + strand, within Atu3523 at 572.926 kb on + strand, within Atu3523 at 572.934 kb on - strand, within Atu3523 at 572.934 kb on - strand, within Atu3523 at 573.091 kb on + strand, within Atu3523 at 573.099 kb on - strand, within Atu3523 at 573.219 kb on - strand, within Atu3523 at 573.439 kb on - strand, within Atu3523 at 573.530 kb on - strand, within Atu3523 at 573.586 kb on + strand, within Atu3523 at 573.675 kb on - strand at 573.736 kb on + strand at 573.736 kb on + strand at 573.744 kb on - strand at 573.744 kb on - strand at 573.744 kb on - strand at 573.744 kb on - strand at 573.744 kb on - strand at 573.744 kb on - strand at 574.189 kb on - strand, within Atu8188 at 574.314 kb on - strand, within Atu8188 at 574.315 kb on - strand, within Atu8188 at 574.315 kb on - strand, within Atu8188 at 574.414 kb on + strand, within Atu8188 at 574.414 kb on + strand, within Atu8188 at 574.414 kb on - strand, within Atu8188 at 574.422 kb on - strand, within Atu8188 at 574.454 kb on - strand, within Atu8188 at 574.479 kb on + strand, within Atu8188 at 574.502 kb on + strand, within Atu8188 at 574.562 kb on - strand, within Atu8188 at 574.591 kb on - strand, within Atu8188 at 574.650 kb on + strand, within Atu8188 at 574.806 kb on + strand, within Atu8188 at 574.838 kb on + strand, within Atu8188 at 574.969 kb on - strand at 575.041 kb on + strand at 575.191 kb on - strand, within Atu3525 at 575.213 kb on + strand, within Atu3525 at 575.218 kb on + strand, within Atu3525 at 575.236 kb on - strand, within Atu3525 at 575.312 kb on + strand, within Atu3525 at 575.320 kb on - strand, within Atu3525 at 575.381 kb on + strand, within Atu3525 at 575.432 kb on - strand, within Atu3525 at 575.432 kb on - strand, within Atu3525 at 575.660 kb on + strand, within Atu3525 at 575.793 kb on + strand at 576.001 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 572,789 + Atu3523 0.31 +0.4 572,832 + Atu3523 0.34 +0.3 572,926 + Atu3523 0.41 +0.2 572,934 - Atu3523 0.41 +0.5 572,934 - Atu3523 0.41 +0.3 573,091 + Atu3523 0.53 -1.3 573,099 - Atu3523 0.53 +1.9 573,219 - Atu3523 0.62 +0.1 573,439 - Atu3523 0.77 +0.1 573,530 - Atu3523 0.84 +1.5 573,586 + Atu3523 0.88 -0.3 573,675 - +0.3 573,736 + +2.5 573,736 + +0.8 573,744 - +0.4 573,744 - -0.1 573,744 - +0.3 573,744 - -0.1 573,744 - -0.2 573,744 - +1.1 574,189 - Atu8188 0.33 +0.5 574,314 - Atu8188 0.43 +0.0 574,315 - Atu8188 0.43 -0.2 574,315 - Atu8188 0.43 -2.4 574,414 + Atu8188 0.51 +0.7 574,414 + Atu8188 0.51 +0.8 574,414 - Atu8188 0.51 +0.1 574,422 - Atu8188 0.51 +0.9 574,454 - Atu8188 0.54 +0.8 574,479 + Atu8188 0.56 +0.9 574,502 + Atu8188 0.57 +1.1 574,562 - Atu8188 0.62 +0.4 574,591 - Atu8188 0.64 +0.2 574,650 + Atu8188 0.69 +1.3 574,806 + Atu8188 0.81 +0.2 574,838 + Atu8188 0.84 +0.2 574,969 - -1.3 575,041 + +0.6 575,191 - Atu3525 0.14 +0.1 575,213 + Atu3525 0.18 -0.1 575,218 + Atu3525 0.19 +0.5 575,236 - Atu3525 0.21 +0.2 575,312 + Atu3525 0.33 -0.1 575,320 - Atu3525 0.34 -0.1 575,381 + Atu3525 0.43 +0.9 575,432 - Atu3525 0.51 -0.1 575,432 - Atu3525 0.51 -0.1 575,660 + Atu3525 0.85 +0.3 575,793 + +0.6 576,001 + +0.2
Or see this region's nucleotide sequence