Strain Fitness in Agrobacterium fabrum C58 around Atu6021

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
29,003	-		Atu6019	0.51	+1.1
29,005	+		Atu6019	0.52	+0.2
29,025	-		Atu6019	0.53	+0.5
29,044	-		Atu6019	0.54	+0.1
29,049	-		Atu6019	0.55	+2.4
29,091	-		Atu6019	0.58	-0.4
29,091	-		Atu6019	0.58	-1.1
29,094	-		Atu6019	0.58	+0.2
29,094	-		Atu6019	0.58	-0.4
29,127	-		Atu6019	0.60	-0.9
29,189	+		Atu6019	0.65	-0.2
29,189	+		Atu6019	0.65	+0.4
29,195	-		Atu6019	0.65	+0.3
29,197	-		Atu6019	0.65	+0.0
29,197	-		Atu6019	0.65	+0.6
29,202	+		Atu6019	0.65	+1.2
29,202	+		Atu6019	0.65	-0.1
29,210	-		Atu6019	0.66	-0.2
29,239	+		Atu6019	0.68	+0.0
29,255	-		Atu6019	0.69	-0.1
29,266	+		Atu6019	0.70	-0.2
29,266	+		Atu6019	0.70	+0.5
29,271	+		Atu6019	0.70	+0.2
29,403	-		Atu6019	0.80	+0.1
29,405	+		Atu6019	0.80	+0.1
29,413	-		Atu6019	0.80	+0.0
29,423	+		Atu6019	0.81	+0.4
29,423	-		Atu6019	0.81	+0.5
29,470	+		Atu6019	0.84	-0.5
29,481	+		Atu6019	0.85	+1.3
29,562	+				+0.0
29,565	-				+0.1
29,594	+				+0.4
29,626	-				+0.3
29,700	+				-0.2
29,754	+		Atu6020	0.22	+0.0
29,754	+		Atu6020	0.22	+0.1
29,820	-		Atu6020	0.45	+0.2
29,832	-		Atu6020	0.49	+0.1
29,832	-		Atu6020	0.49	+1.2
29,834	+		Atu6020	0.50	+0.6
29,885	-		Atu6020	0.67	-0.2
29,931	-		Atu6020	0.83	-0.1
29,990	-				+0.0
30,034	+				-0.2
30,082	+				-0.2
30,129	-		Atu6021	0.13	+0.4
30,181	+		Atu6021	0.18	-0.0
30,189	-		Atu6021	0.19	-0.4
30,199	-		Atu6021	0.20	-0.9
30,295	-		Atu6021	0.28	-0.0
30,354	+		Atu6021	0.34	+1.0
30,455	-		Atu6021	0.43	+1.8
30,455	-		Atu6021	0.43	-0.7
30,500	-		Atu6021	0.47	+0.1
30,504	+		Atu6021	0.47	+0.4
30,521	-		Atu6021	0.49	+0.2
30,545	+		Atu6021	0.51	-0.6
30,583	+		Atu6021	0.54	-0.1
30,583	+		Atu6021	0.54	+0.6
30,588	+		Atu6021	0.55	-0.3
30,601	-		Atu6021	0.56	+0.9
30,621	+		Atu6021	0.57	+0.1
30,629	-		Atu6021	0.58	+0.3
30,635	+		Atu6021	0.59	+0.2
30,643	-		Atu6021	0.59	+0.6
30,652	+		Atu6021	0.60	+0.5
30,657	+		Atu6021	0.61	+0.8
30,657	+		Atu6021	0.61	-0.1
30,657	+		Atu6021	0.61	+0.3
30,660	-		Atu6021	0.61	+0.1
30,660	-		Atu6021	0.61	-0.2
30,660	-		Atu6021	0.61	-0.9
30,798	+		Atu6021	0.73	-0.1
30,888	+		Atu6021	0.81	+0.0
30,891	-		Atu6021	0.82	+0.2
30,918	-		Atu6021	0.84	-0.3
30,930	+		Atu6021	0.85	+0.1
30,930	+		Atu6021	0.85	+0.0
30,935	+		Atu6021	0.86	+0.3
30,938	-		Atu6021	0.86	+0.3
30,942	+		Atu6021	0.86	+0.2
30,942	+		Atu6021	0.86	-0.7
30,950	-		Atu6021	0.87	-0.7
30,950	-		Atu6021	0.87	+1.0
30,950	-		Atu6021	0.87	-1.0
30,950	-		Atu6021	0.87	-0.6
30,960	-		Atu6021	0.88	-0.1
30,982	-		Atu6021	0.90	+0.3
31,033	-				-0.1
31,060	-				+0.5
31,062	-				-1.4
31,085	+				+0.3
31,132	+				-0.6
31,154	+				+0.3
31,182	+				+0.5
31,200	+				-1.0
31,202	+				+0.3
31,202	+				+0.1
31,202	+				-0.1
31,202	+				-0.5
31,210	-				-0.1
31,210	-				-1.2
31,210	-				-0.1
31,210	-				+0.6
31,210	-				+0.3
31,241	+				-0.0
31,274	+				+0.6
31,274	+				-0.1
31,282	-				-0.6
31,282	-				+1.1
31,323	-				-0.2
31,352	+				-0.1
31,359	-				-0.1
31,359	-				+0.0
31,359	-				-0.1
31,429	+				+0.1
31,429	+				-0.6
31,429	+				+0.0
31,429	+				+0.3
31,429	+				+0.1
31,437	-				+0.9
31,437	-				+1.7
31,437	-				+0.1
31,437	-				-0.4
31,437	-				+0.3
31,437	-				-0.1
31,437	-				-0.3
31,437	-				+0.6
31,463	+				-0.2
31,486	+				+0.7
31,506	+				-0.2
31,510	+				-0.0
31,511	+				-0.5
31,518	-				+0.2
31,642	+				-0.7
31,642	+				-1.2
31,642	+				+0.1
31,642	+				+0.6
31,642	+				-0.4
31,642	+				+0.0
31,650	-				+0.4
31,650	-				-0.4
31,650	-				-0.1
31,650	-				-0.0
31,650	-				-0.2
31,730	-				+0.2
31,757	+				+0.0
31,757	+				+0.1
31,757	+				-0.7
31,769	+				-1.7
31,777	-				-0.2
31,793	+				-0.2
31,793	+				-0.3
31,795	-				-0.7
31,803	+				-0.1
31,899	+				-0.9
31,905	-				+0.0
31,905	-				+0.2
31,907	-				-0.4
31,918	+		Atu6022	0.11	-0.1
31,969	+		Atu6022	0.13	+0.8
31,972	-		Atu6022	0.13	+3.6
31,979	+		Atu6022	0.14	-0.7
32,010	+		Atu6022	0.15	+0.7
32,010	+		Atu6022	0.15	-1.1
32,010	+		Atu6022	0.15	+0.9
32,011	+		Atu6022	0.15	+0.0
32,018	-		Atu6022	0.15	-0.2
32,018	-		Atu6022	0.15	+1.2
32,028	+		Atu6022	0.16	+0.0
32,068	+		Atu6022	0.18	-0.0
32,076	-		Atu6022	0.18	+0.1
32,078	-		Atu6022	0.18	-0.9
32,094	+		Atu6022	0.19	+0.4