Strain Fitness in Agrobacterium fabrum C58 around Atu5010

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
11,685	+				+0.4
11,700	-				-0.4
11,751	-				+0.3
11,832	-				-0.8
11,832	-				+0.0
11,842	+				-0.2
11,843	+				+0.4
11,850	-				+0.6
11,869	-				-0.3
11,935	+				+0.2
12,024	+				+1.6
12,025	+				-0.9
12,047	+				-1.4
12,055	-				+1.0
12,055	-				-0.6
12,055	-				-0.3
12,055	-				+0.5
12,055	-				+0.5
12,060	-				-0.7
12,241	-				-0.3
12,248	+				-0.2
12,263	+				-0.1
12,306	+				-0.1
12,404	-				-0.9
12,434	+				+1.3
12,496	+				-0.3
12,515	-				-0.3
12,591	-		Atu5010	0.37	+0.3
12,637	+		Atu5010	0.60	+0.5
12,682	+		Atu5010	0.82	-0.3
12,682	+		Atu5010	0.82	+0.7
12,746	+				-0.3
12,827	+				+0.5
12,827	+				-0.1
12,835	-				+0.1
12,932	-				+0.0
12,980	-				+0.9
13,116	+				+1.4
13,175	+		Atu5011	0.14	-0.0
13,207	-		Atu5011	0.19	-0.7
13,224	+		Atu5011	0.22	-0.5
13,280	+		Atu5011	0.31	-0.5
13,390	+		Atu5011	0.48	+0.4
13,569	-		Atu5011	0.76	+0.2
13,569	-		Atu5011	0.76	+0.6
13,574	+		Atu5011	0.77	-0.4
13,619	-		Atu5011	0.84	+0.1