Strain Fitness in Agrobacterium fabrum C58 around Atu4890

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
2,065,637	+		Atu4888	0.69	+1.9
2,065,669	+		Atu4888	0.80	+0.8
2,065,760	-				+0.8
2,065,762	+				+1.4
2,065,787	+				+0.5
2,065,808	+				+2.7
2,065,816	-				-1.2
2,065,826	+				+1.5
2,065,899	-		Atu4889	0.13	+1.6
2,065,944	+		Atu4889	0.18	+3.2
2,065,977	-		Atu4889	0.22	+1.3
2,065,994	+		Atu4889	0.25	+1.0
2,066,015	+		Atu4889	0.27	+0.4
2,066,071	-		Atu4889	0.34	+0.9
2,066,224	+		Atu4889	0.53	+0.3
2,066,463	-		Atu4889	0.83	+0.7
2,066,504	+		Atu4889	0.88	+0.8
2,066,513	+		Atu4889	0.89	+1.4
2,066,559	-				+1.0
2,066,613	-				+0.9
2,067,147	+		Atu4890	0.67	+1.4
2,067,924	+				-0.9
2,067,976	+				+1.5
2,067,984	-				+1.3
2,067,996	+				+1.1
2,067,996	+				+1.4
2,067,996	-				+1.0
2,068,133	+				+1.6
2,068,141	-				+1.3
2,068,205	+				+1.5
2,068,213	-				+1.1
2,068,218	-				+1.5
2,068,221	+				+1.5
2,068,222	-				+1.1
2,068,291	-		Atu4892	0.10	+1.8
2,068,312	+		Atu4892	0.11	+0.9
2,068,393	-		Atu4892	0.15	+1.3