Strain Fitness in Agrobacterium fabrum C58 around Atu3894

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
988,247	+		Atu3892	0.87	+0.2
988,255	-		Atu3892	0.89	-0.1
988,287	+				+0.6
988,294	-				-0.1
988,294	-				+0.5
988,317	-				-0.4
988,389	+		Atu3893	0.11	-1.2
988,397	-		Atu3893	0.12	-0.2
988,416	+		Atu3893	0.14	+0.7
988,490	+		Atu3893	0.22	+0.7
988,671	+		Atu3893	0.42	-0.7
988,708	-		Atu3893	0.46	-0.9
988,761	+		Atu3893	0.52	+0.2
988,828	+		Atu3893	0.59	-0.5
988,828	+		Atu3893	0.59	-0.7
988,870	+		Atu3893	0.64	+0.4
988,904	+		Atu3893	0.67	-0.3
988,924	+		Atu3893	0.70	-0.7
988,950	-		Atu3893	0.72	-0.9
988,950	-		Atu3893	0.72	-0.5
988,973	+		Atu3893	0.75	-0.5
989,050	+		Atu3893	0.83	-0.1
989,051	+		Atu3893	0.83	-0.5
989,105	+		Atu3893	0.89	-0.6
989,114	+				-0.4
989,123	+				-0.3
989,124	+				-0.4
989,125	+				-0.6
989,130	+				-0.9
989,187	+				-0.4
989,195	-				+0.4
989,195	-				-0.3
989,202	+				+0.2
989,232	+				-0.2
989,235	-				-0.9
989,237	+				-0.5
989,237	+				-1.0
989,240	-				-0.9
989,245	-				-0.2
989,246	+				-1.3
989,247	+				-0.4
989,247	-				-0.5
989,252	+				-0.6
989,252	+				-1.1
989,314	-		Atu3894	0.12	-0.1
989,314	-		Atu3894	0.12	-0.1
989,353	-		Atu3894	0.17	-0.5
989,362	-		Atu3894	0.18	-0.6
989,362	-		Atu3894	0.18	-0.7
989,385	+		Atu3894	0.21	+0.1
989,416	+		Atu3894	0.24	-2.7
989,477	+		Atu3894	0.31	-0.3
989,477	+		Atu3894	0.31	-0.9
989,485	-		Atu3894	0.32	-0.8
989,577	+		Atu3894	0.43	-0.5
989,595	-		Atu3894	0.45	+0.0
989,595	-		Atu3894	0.45	-0.2
989,644	+		Atu3894	0.51	-0.3
989,742	-		Atu3894	0.62	-0.5
989,750	+		Atu3894	0.63	-0.3
989,892	+		Atu3894	0.79	-0.5
989,899	+		Atu3894	0.80	+0.8
989,959	+		Atu3894	0.87	-0.5
989,959	+		Atu3894	0.87	-0.4
989,967	-		Atu3894	0.88	-1.2
989,967	-		Atu3894	0.88	-1.3
989,967	-		Atu3894	0.88	+0.1
990,087	-				+1.3
990,189	+		Atu3895	0.11	-1.3
990,217	+		Atu3895	0.13	-0.1
990,330	-		Atu3895	0.24	-1.9
990,353	+		Atu3895	0.26	-0.1
990,501	+		Atu3895	0.40	-0.1
990,531	-		Atu3895	0.43	-1.2
990,536	-		Atu3895	0.43	-0.2
990,536	-		Atu3895	0.43	-1.5
990,536	-		Atu3895	0.43	-0.4
990,541	+		Atu3895	0.44	-0.6
990,551	+		Atu3895	0.44	-0.6
990,553	-		Atu3895	0.45	-1.0
990,556	+		Atu3895	0.45	-0.4
990,559	-		Atu3895	0.45	+0.2
990,592	+		Atu3895	0.48	-0.8
990,593	-		Atu3895	0.48	+0.4
990,594	+		Atu3895	0.48	-0.9
990,600	-		Atu3895	0.49	-0.1
990,672	-		Atu3895	0.56	-0.3
990,711	-		Atu3895	0.59	-0.7
990,741	+		Atu3895	0.62	+0.2
990,828	-		Atu3895	0.70	+0.2
990,882	-		Atu3895	0.75	-0.4
990,890	+		Atu3895	0.76	+0.6
990,896	-		Atu3895	0.77	-0.5
990,956	+		Atu3895	0.82	-1.1
990,964	-		Atu3895	0.83	-0.5
990,966	+		Atu3895	0.83	-1.9
991,000	+		Atu3895	0.86	-0.5
991,018	+		Atu3895	0.88	-0.4
991,026	-		Atu3895	0.89	-0.5
991,046	+				-0.6