Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3522 and Atu3523 are separated by 56 nucleotides Atu3523 and Atu8188 are separated by 8 nucleotides
Atu3522: Atu3522 - glucans biosynthesis protein, at 571,088 to 572,290
Atu3522
Atu3523: Atu3523 - polysaccharide biosynthesis-like protein, at 572,347 to 573,762
Atu3523
Atu8188: Atu8188 - hypothetical protein, at 573,771 to 575,042
Atu8188
Position (kb) 572
573
574 Strain fitness (log2 ratio) -2
-1
0
1
2 at 571.698 kb on - strand, within Atu3522 at 572.157 kb on - strand, within Atu3522 at 572.282 kb on - strand at 572.306 kb on + strand at 572.348 kb on + strand at 572.353 kb on + strand at 572.361 kb on - strand at 572.373 kb on + strand at 572.381 kb on + strand at 572.483 kb on + strand at 572.486 kb on + strand at 572.587 kb on + strand, within Atu3523 at 572.635 kb on + strand, within Atu3523 at 572.643 kb on - strand, within Atu3523 at 572.720 kb on - strand, within Atu3523 at 572.789 kb on + strand, within Atu3523 at 572.832 kb on + strand, within Atu3523 at 572.926 kb on + strand, within Atu3523 at 572.934 kb on - strand, within Atu3523 at 572.934 kb on - strand, within Atu3523 at 573.091 kb on + strand, within Atu3523 at 573.099 kb on - strand, within Atu3523 at 573.219 kb on - strand, within Atu3523 at 573.439 kb on - strand, within Atu3523 at 573.530 kb on - strand, within Atu3523 at 573.586 kb on + strand, within Atu3523 at 573.675 kb on - strand at 573.736 kb on + strand at 573.736 kb on + strand at 573.744 kb on - strand at 573.744 kb on - strand at 573.744 kb on - strand at 573.744 kb on - strand at 573.744 kb on - strand at 573.744 kb on - strand at 574.189 kb on - strand, within Atu8188 at 574.314 kb on - strand, within Atu8188 at 574.315 kb on - strand, within Atu8188 at 574.315 kb on - strand, within Atu8188 at 574.414 kb on + strand, within Atu8188 at 574.414 kb on + strand, within Atu8188 at 574.414 kb on - strand, within Atu8188 at 574.422 kb on - strand, within Atu8188 at 574.454 kb on - strand, within Atu8188 at 574.479 kb on + strand, within Atu8188 at 574.502 kb on + strand, within Atu8188 at 574.562 kb on - strand, within Atu8188 at 574.591 kb on - strand, within Atu8188 at 574.650 kb on + strand, within Atu8188
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 571,698 - Atu3522 0.51 +0.3 572,157 - Atu3522 0.89 -0.1 572,282 - -0.6 572,306 + -1.1 572,348 + -0.1 572,353 + -0.2 572,361 - +0.4 572,373 + +0.0 572,381 + +0.2 572,483 + +0.6 572,486 + +0.4 572,587 + Atu3523 0.17 +0.7 572,635 + Atu3523 0.20 +0.9 572,643 - Atu3523 0.21 +0.6 572,720 - Atu3523 0.26 +0.1 572,789 + Atu3523 0.31 +0.4 572,832 + Atu3523 0.34 +0.3 572,926 + Atu3523 0.41 +0.2 572,934 - Atu3523 0.41 +0.5 572,934 - Atu3523 0.41 +0.3 573,091 + Atu3523 0.53 -1.3 573,099 - Atu3523 0.53 +1.9 573,219 - Atu3523 0.62 +0.1 573,439 - Atu3523 0.77 +0.1 573,530 - Atu3523 0.84 +1.5 573,586 + Atu3523 0.88 -0.3 573,675 - +0.3 573,736 + +2.5 573,736 + +0.8 573,744 - +0.4 573,744 - -0.1 573,744 - +0.3 573,744 - -0.1 573,744 - -0.2 573,744 - +1.1 574,189 - Atu8188 0.33 +0.5 574,314 - Atu8188 0.43 +0.0 574,315 - Atu8188 0.43 -0.2 574,315 - Atu8188 0.43 -2.4 574,414 + Atu8188 0.51 +0.7 574,414 + Atu8188 0.51 +0.8 574,414 - Atu8188 0.51 +0.1 574,422 - Atu8188 0.51 +0.9 574,454 - Atu8188 0.54 +0.8 574,479 + Atu8188 0.56 +0.9 574,502 + Atu8188 0.57 +1.1 574,562 - Atu8188 0.62 +0.4 574,591 - Atu8188 0.64 +0.2 574,650 + Atu8188 0.69 +1.3
Or see this region's nucleotide sequence