Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3214 and Atu3215 overlap by 4 nucleotides Atu3215 and Atu3216 overlap by 4 nucleotides Atu3216 and Atu3217 are separated by 3 nucleotides
Atu3214: Atu3214 - oligopeptide ABC transporter permease, at 229,194 to 230,024
Atu3214
Atu3215: Atu3215 - oligopeptide ABC transporter ATPase, at 230,021 to 230,824
Atu3215
Atu3216: Atu3216 - oligopeptide ABC transporter ATPase, at 230,821 to 231,606
Atu3216
Atu3217: Atu3217 - aspartate aminotransferase, at 231,610 to 232,728
Atu3217
Position (kb) 230
231
232 Strain fitness (log2 ratio) -1
0
1 at 229.875 kb on - strand, within Atu3214 at 229.901 kb on + strand, within Atu3214 at 229.971 kb on - strand at 229.983 kb on + strand at 229.991 kb on - strand at 229.991 kb on - strand at 230.082 kb on + strand at 230.090 kb on - strand at 230.090 kb on - strand at 230.100 kb on - strand at 230.107 kb on - strand, within Atu3215 at 230.297 kb on - strand, within Atu3215 at 230.446 kb on + strand, within Atu3215 at 230.601 kb on - strand, within Atu3215 at 230.627 kb on - strand, within Atu3215 at 230.660 kb on - strand, within Atu3215 at 230.666 kb on - strand, within Atu3215 at 230.749 kb on + strand at 230.750 kb on + strand at 230.755 kb on - strand at 230.755 kb on - strand at 230.758 kb on - strand at 230.838 kb on - strand at 230.853 kb on + strand at 230.853 kb on + strand at 230.861 kb on - strand at 230.861 kb on - strand at 230.861 kb on - strand at 230.861 kb on - strand at 230.861 kb on - strand at 230.991 kb on + strand, within Atu3216 at 231.012 kb on - strand, within Atu3216 at 231.149 kb on - strand, within Atu3216 at 231.156 kb on + strand, within Atu3216 at 231.221 kb on + strand, within Atu3216 at 231.283 kb on - strand, within Atu3216 at 231.283 kb on - strand, within Atu3216 at 231.283 kb on - strand, within Atu3216 at 231.305 kb on + strand, within Atu3216 at 231.461 kb on - strand, within Atu3216 at 231.543 kb on + strand at 231.606 kb on + strand at 231.610 kb on - strand at 231.610 kb on - strand at 231.614 kb on - strand at 231.671 kb on - strand at 231.671 kb on - strand at 231.763 kb on + strand, within Atu3217 at 231.806 kb on + strand, within Atu3217 at 232.020 kb on + strand, within Atu3217 at 232.028 kb on - strand, within Atu3217 at 232.079 kb on + strand, within Atu3217 at 232.174 kb on - strand, within Atu3217 at 232.255 kb on - strand, within Atu3217 at 232.333 kb on - strand, within Atu3217 at 232.484 kb on - strand, within Atu3217 at 232.497 kb on - strand, within Atu3217 at 232.546 kb on - strand, within Atu3217 at 232.580 kb on - strand, within Atu3217
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 229,875 - Atu3214 0.82 +0.1 229,901 + Atu3214 0.85 -0.2 229,971 - -1.7 229,983 + +0.2 229,991 - -0.0 229,991 - +0.2 230,082 + +0.1 230,090 - +0.2 230,090 - -0.2 230,100 - +0.0 230,107 - Atu3215 0.11 +0.2 230,297 - Atu3215 0.34 -0.1 230,446 + Atu3215 0.53 +0.7 230,601 - Atu3215 0.72 -0.5 230,627 - Atu3215 0.75 -0.9 230,660 - Atu3215 0.79 +0.0 230,666 - Atu3215 0.80 -0.1 230,749 + +1.4 230,750 + -0.3 230,755 - +0.1 230,755 - +1.5 230,758 - +1.1 230,838 - -0.1 230,853 + -0.7 230,853 + -0.2 230,861 - -0.1 230,861 - -0.7 230,861 - +0.1 230,861 - +1.0 230,861 - +0.2 230,991 + Atu3216 0.22 +0.1 231,012 - Atu3216 0.24 +0.7 231,149 - Atu3216 0.42 -0.1 231,156 + Atu3216 0.43 +0.1 231,221 + Atu3216 0.51 +0.2 231,283 - Atu3216 0.59 -0.5 231,283 - Atu3216 0.59 +0.4 231,283 - Atu3216 0.59 +0.9 231,305 + Atu3216 0.62 -0.2 231,461 - Atu3216 0.81 +0.6 231,543 + +0.2 231,606 + +1.2 231,610 - -0.7 231,610 - -0.2 231,614 - -1.3 231,671 - +0.5 231,671 - +0.3 231,763 + Atu3217 0.14 -0.3 231,806 + Atu3217 0.18 -0.7 232,020 + Atu3217 0.37 +0.0 232,028 - Atu3217 0.37 -0.9 232,079 + Atu3217 0.42 -0.3 232,174 - Atu3217 0.50 +0.1 232,255 - Atu3217 0.58 -0.3 232,333 - Atu3217 0.65 -0.1 232,484 - Atu3217 0.78 +0.0 232,497 - Atu3217 0.79 -0.1 232,546 - Atu3217 0.84 -0.0 232,580 - Atu3217 0.87 -0.2
Or see this region's nucleotide sequence