Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3207 and Atu3208 are separated by 37 nucleotides Atu3208 and Atu3210 are separated by 311 nucleotides
Atu3207: Atu3207 - diguanylate cyclase, at 220,091 to 222,085
Atu3207
Atu3208: Atu3208 - malate dehydrogenase, at 222,123 to 223,169
Atu3208
Atu3210: Atu3210 - ftsk cell division protein, at 223,481 to 226,213
Atu3210
Position (kb) 222
223
224 Strain fitness (log2 ratio) -2
-1
0
1 at 221.171 kb on - strand, within Atu3207 at 221.406 kb on - strand, within Atu3207 at 221.444 kb on + strand, within Atu3207 at 221.569 kb on - strand, within Atu3207 at 221.580 kb on - strand, within Atu3207 at 221.639 kb on - strand, within Atu3207 at 221.639 kb on - strand, within Atu3207 at 221.661 kb on + strand, within Atu3207 at 221.719 kb on - strand, within Atu3207 at 221.721 kb on + strand, within Atu3207 at 221.729 kb on - strand, within Atu3207 at 221.866 kb on + strand, within Atu3207 at 221.953 kb on + strand at 221.990 kb on - strand at 222.000 kb on - strand at 222.320 kb on + strand, within Atu3208 at 222.374 kb on + strand, within Atu3208 at 222.444 kb on + strand, within Atu3208 at 222.533 kb on - strand, within Atu3208 at 222.630 kb on - strand, within Atu3208 at 222.654 kb on - strand, within Atu3208 at 222.701 kb on + strand, within Atu3208 at 222.972 kb on + strand, within Atu3208 at 223.016 kb on - strand, within Atu3208 at 223.037 kb on + strand, within Atu3208 at 223.045 kb on - strand, within Atu3208 at 223.047 kb on - strand, within Atu3208 at 223.058 kb on + strand, within Atu3208 at 223.066 kb on - strand at 223.145 kb on + strand at 223.206 kb on + strand at 223.311 kb on + strand at 223.319 kb on - strand at 223.402 kb on + strand at 223.462 kb on + strand at 223.470 kb on - strand at 223.470 kb on - strand at 223.633 kb on + strand at 223.636 kb on - strand at 223.700 kb on + strand at 223.727 kb on + strand at 223.785 kb on - strand, within Atu3210 at 223.864 kb on - strand, within Atu3210 at 223.977 kb on - strand, within Atu3210 at 223.981 kb on + strand, within Atu3210 at 224.063 kb on - strand, within Atu3210
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 221,171 - Atu3207 0.54 -0.6 221,406 - Atu3207 0.66 +0.2 221,444 + Atu3207 0.68 -0.5 221,569 - Atu3207 0.74 -0.6 221,580 - Atu3207 0.75 -1.9 221,639 - Atu3207 0.78 -0.4 221,639 - Atu3207 0.78 +0.1 221,661 + Atu3207 0.79 -0.5 221,719 - Atu3207 0.82 -0.5 221,721 + Atu3207 0.82 +0.6 221,729 - Atu3207 0.82 -1.5 221,866 + Atu3207 0.89 -0.5 221,953 + -0.9 221,990 - -0.5 222,000 - +0.1 222,320 + Atu3208 0.19 -0.4 222,374 + Atu3208 0.24 -0.1 222,444 + Atu3208 0.31 +0.7 222,533 - Atu3208 0.39 +0.3 222,630 - Atu3208 0.48 +1.1 222,654 - Atu3208 0.51 +0.4 222,701 + Atu3208 0.55 -0.5 222,972 + Atu3208 0.81 -0.3 223,016 - Atu3208 0.85 -0.0 223,037 + Atu3208 0.87 +1.0 223,045 - Atu3208 0.88 +0.1 223,047 - Atu3208 0.88 +0.1 223,058 + Atu3208 0.89 +1.6 223,066 - +0.0 223,145 + -0.3 223,206 + -0.3 223,311 + -0.6 223,319 - -0.0 223,402 + +0.1 223,462 + +0.3 223,470 - -0.1 223,470 - -0.1 223,633 + -0.2 223,636 - +0.8 223,700 + +0.2 223,727 + -0.2 223,785 - Atu3210 0.11 +0.2 223,864 - Atu3210 0.14 +0.1 223,977 - Atu3210 0.18 -0.2 223,981 + Atu3210 0.18 +0.2 224,063 - Atu3210 0.21 -0.0
Or see this region's nucleotide sequence