Strain Fitness in Agrobacterium fabrum C58 around Atu3088

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
92,581	-		Atu3087	0.18	-0.9
92,598	-		Atu3087	0.20	-0.1
92,676	+		Atu3087	0.29	-0.0
92,762	+		Atu3087	0.38	+0.7
92,762	+		Atu3087	0.38	+0.9
92,770	-		Atu3087	0.39	+0.2
92,774	+		Atu3087	0.39	-0.2
92,791	+		Atu3087	0.41	-0.2
92,799	-		Atu3087	0.42	-1.3
92,813	+		Atu3087	0.44	+0.1
92,867	+		Atu3087	0.49	-0.3
92,875	-		Atu3087	0.50	+0.2
92,953	-		Atu3087	0.59	-0.2
92,964	-		Atu3087	0.60	-0.5
93,020	+		Atu3087	0.66	+2.1
93,020	+		Atu3087	0.66	-0.7
93,020	+		Atu3087	0.66	-0.3
93,020	+		Atu3087	0.66	+0.9
93,020	+		Atu3087	0.66	-0.0
93,020	+		Atu3087	0.66	-0.2
93,020	+		Atu3087	0.66	-0.1
93,028	-		Atu3087	0.67	+1.2
93,083	-		Atu3087	0.73	-0.6
93,090	+		Atu3087	0.74	-1.0
93,090	+		Atu3087	0.74	-0.0
93,115	+		Atu3087	0.77	-0.6
93,139	+		Atu3087	0.79	-0.8
93,244	+				+3.3
93,272	-				-0.2
93,312	+				+0.2
93,312	+				-0.3
93,332	-				-0.7
93,376	+				-0.0
93,444	-				-0.5
93,484	-				+0.9
93,500	+				-0.5
93,508	-				-0.2
93,516	-				+0.4
93,599	+				-0.2
93,662	-				-0.0
93,737	-		Atu3088	0.13	-0.2
93,742	-		Atu3088	0.14	-0.4
93,757	-		Atu3088	0.15	-1.1
93,790	+		Atu3088	0.17	-0.8
93,848	-		Atu3088	0.22	-0.2
93,875	+		Atu3088	0.24	-0.2
93,898	-		Atu3088	0.26	-0.7
93,909	+		Atu3088	0.27	-0.2
93,910	+		Atu3088	0.27	-0.9
93,917	-		Atu3088	0.27	+0.6
93,918	-		Atu3088	0.27	-0.2
93,931	+		Atu3088	0.28	+0.4
94,071	-		Atu3088	0.39	-0.1
94,081	-		Atu3088	0.40	-0.7
94,097	+		Atu3088	0.41	-0.1
94,296	+		Atu3088	0.57	-0.7
94,342	-		Atu3088	0.60	+0.4
94,431	-		Atu3088	0.67	-0.3
94,498	-		Atu3088	0.72	-0.1
94,532	-		Atu3088	0.75	-0.0
94,540	-		Atu3088	0.76	+1.4
94,658	+		Atu3088	0.85	+0.2
94,666	-		Atu3088	0.85	+0.1
94,756	+				-0.1
94,761	+				-0.3
94,769	-				+0.4
94,769	-				+1.0
94,832	-				-0.1
95,126	-		Atu3089	0.22	+0.4
95,155	-		Atu3089	0.25	-0.4
95,378	+		Atu3089	0.45	+0.2
95,384	-		Atu3089	0.46	+1.0
95,431	+		Atu3089	0.50	+0.1
95,475	-		Atu3089	0.54	-0.2
95,497	-		Atu3089	0.56	-0.5
95,577	+		Atu3089	0.64	-0.3
95,629	-		Atu3089	0.69	-0.0
95,676	-		Atu3089	0.73	+0.5
95,722	+		Atu3089	0.77	-0.0
95,766	+		Atu3089	0.81	-0.1
95,818	+		Atu3089	0.86	+1.9