Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3036 and Atu3037 overlap by 1 nucleotides Atu3037 and Atu3038 are separated by 4 nucleotides
Atu3036: Atu3036 - dipeptide ABC transporter permease, at 30,038 to 31,066
Atu3036
Atu3037: Atu3037 - dipeptide ABC transporter permease, at 31,066 to 31,947
Atu3037
Atu3038: Atu3038 - dipeptide ABC transporter ATPase, at 31,952 to 33,598
Atu3038
Position (kb) 31
32 Strain fitness (log2 ratio) -1
0
1 at 30.091 kb on + strand at 30.358 kb on + strand, within Atu3036 at 30.358 kb on + strand, within Atu3036 at 30.358 kb on + strand, within Atu3036 at 30.596 kb on - strand, within Atu3036 at 30.758 kb on - strand, within Atu3036 at 30.938 kb on - strand, within Atu3036 at 30.946 kb on + strand, within Atu3036 at 31.006 kb on + strand at 31.099 kb on - strand at 31.104 kb on - strand at 31.131 kb on - strand at 31.231 kb on - strand, within Atu3037 at 31.342 kb on - strand, within Atu3037 at 31.379 kb on + strand, within Atu3037 at 31.402 kb on + strand, within Atu3037 at 31.405 kb on - strand, within Atu3037 at 31.587 kb on + strand, within Atu3037 at 31.669 kb on + strand, within Atu3037 at 31.718 kb on - strand, within Atu3037 at 31.718 kb on - strand, within Atu3037 at 31.718 kb on - strand, within Atu3037 at 31.764 kb on - strand, within Atu3037 at 31.793 kb on + strand, within Atu3037 at 31.800 kb on - strand, within Atu3037 at 31.801 kb on - strand, within Atu3037 at 31.857 kb on + strand, within Atu3037 at 31.862 kb on + strand at 31.865 kb on - strand at 31.870 kb on - strand at 31.873 kb on + strand at 31.873 kb on + strand at 31.895 kb on + strand at 31.956 kb on - strand at 31.961 kb on - strand at 32.008 kb on - strand at 32.021 kb on + strand at 32.029 kb on - strand at 32.088 kb on - strand at 32.156 kb on - strand, within Atu3038 at 32.172 kb on + strand, within Atu3038 at 32.244 kb on - strand, within Atu3038 at 32.338 kb on + strand, within Atu3038 at 32.372 kb on + strand, within Atu3038 at 32.380 kb on - strand, within Atu3038 at 32.390 kb on - strand, within Atu3038 at 32.415 kb on - strand, within Atu3038 at 32.459 kb on - strand, within Atu3038 at 32.601 kb on - strand, within Atu3038 at 32.612 kb on + strand, within Atu3038 at 32.661 kb on - strand, within Atu3038 at 32.676 kb on - strand, within Atu3038 at 32.686 kb on - strand, within Atu3038 at 32.688 kb on + strand, within Atu3038 at 32.731 kb on + strand, within Atu3038
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 30,091 + -0.0 30,358 + Atu3036 0.31 +0.4 30,358 + Atu3036 0.31 +0.1 30,358 + Atu3036 0.31 +0.7 30,596 - Atu3036 0.54 +0.2 30,758 - Atu3036 0.70 +1.0 30,938 - Atu3036 0.87 +0.2 30,946 + Atu3036 0.88 +0.3 31,006 + +0.5 31,099 - +0.5 31,104 - +0.3 31,131 - +1.0 31,231 - Atu3037 0.19 -0.1 31,342 - Atu3037 0.31 +0.8 31,379 + Atu3037 0.35 +0.3 31,402 + Atu3037 0.38 +0.3 31,405 - Atu3037 0.38 +0.4 31,587 + Atu3037 0.59 +1.3 31,669 + Atu3037 0.68 +0.4 31,718 - Atu3037 0.74 -0.0 31,718 - Atu3037 0.74 +0.3 31,718 - Atu3037 0.74 +0.3 31,764 - Atu3037 0.79 +0.5 31,793 + Atu3037 0.82 -0.1 31,800 - Atu3037 0.83 -0.0 31,801 - Atu3037 0.83 +0.3 31,857 + Atu3037 0.90 +0.3 31,862 + +0.1 31,865 - +0.6 31,870 - +0.4 31,873 + -0.3 31,873 + -0.5 31,895 + +1.0 31,956 - -0.4 31,961 - +0.4 32,008 - -0.0 32,021 + +0.5 32,029 - +0.1 32,088 - +1.0 32,156 - Atu3038 0.12 +0.4 32,172 + Atu3038 0.13 +0.4 32,244 - Atu3038 0.18 +1.5 32,338 + Atu3038 0.23 -0.1 32,372 + Atu3038 0.26 +0.2 32,380 - Atu3038 0.26 +0.3 32,390 - Atu3038 0.27 +0.2 32,415 - Atu3038 0.28 -0.4 32,459 - Atu3038 0.31 +0.3 32,601 - Atu3038 0.39 +0.1 32,612 + Atu3038 0.40 +0.6 32,661 - Atu3038 0.43 -0.4 32,676 - Atu3038 0.44 +0.2 32,686 - Atu3038 0.45 -0.3 32,688 + Atu3038 0.45 +1.0 32,731 + Atu3038 0.47 +0.4
Or see this region's nucleotide sequence