Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3021 and Atu3022 overlap by 4 nucleotides Atu3022 and Atu3023 are separated by 11 nucleotides Atu3023 and Atu3024 are separated by 60 nucleotides
Atu3021: Atu3021 - sugar ABC transporter ATPase, at 13,412 to 14,527
Atu3021
Atu3022: Atu3022 - sugar ABC transporter permease, at 14,524 to 15,453
Atu3022
Atu3023: Atu3023 - sugar ABC transporter permease, at 15,465 to 16,346
Atu3023
Atu3024: Atu3024 - sugar ABC transporter permease, at 16,407 to 17,936
Atu3024
Position (kb) 14
15
16 Strain fitness (log2 ratio) -1
0
1
2 at 13.545 kb on - strand, within Atu3021 at 13.547 kb on - strand, within Atu3021 at 13.659 kb on + strand, within Atu3021 at 13.665 kb on - strand, within Atu3021 at 13.667 kb on + strand, within Atu3021 at 13.671 kb on + strand, within Atu3021 at 13.722 kb on - strand, within Atu3021 at 13.838 kb on + strand, within Atu3021 at 13.846 kb on - strand, within Atu3021 at 13.920 kb on + strand, within Atu3021 at 13.990 kb on - strand, within Atu3021 at 14.051 kb on - strand, within Atu3021 at 14.061 kb on - strand, within Atu3021 at 14.158 kb on + strand, within Atu3021 at 14.198 kb on - strand, within Atu3021 at 14.198 kb on - strand, within Atu3021 at 14.200 kb on + strand, within Atu3021 at 14.221 kb on - strand, within Atu3021 at 14.221 kb on - strand, within Atu3021 at 14.493 kb on - strand at 14.509 kb on + strand at 14.563 kb on - strand at 14.655 kb on + strand, within Atu3022 at 14.794 kb on + strand, within Atu3022 at 14.794 kb on + strand, within Atu3022 at 14.800 kb on + strand, within Atu3022 at 14.800 kb on + strand, within Atu3022 at 14.848 kb on + strand, within Atu3022 at 14.856 kb on - strand, within Atu3022 at 14.861 kb on - strand, within Atu3022 at 14.863 kb on + strand, within Atu3022 at 14.863 kb on + strand, within Atu3022 at 14.863 kb on + strand, within Atu3022 at 14.866 kb on - strand, within Atu3022 at 14.869 kb on - strand, within Atu3022 at 14.871 kb on - strand, within Atu3022 at 14.871 kb on - strand, within Atu3022 at 14.919 kb on - strand, within Atu3022 at 14.990 kb on + strand, within Atu3022 at 15.055 kb on + strand, within Atu3022 at 15.158 kb on + strand, within Atu3022 at 15.158 kb on + strand, within Atu3022 at 15.183 kb on + strand, within Atu3022 at 15.191 kb on - strand, within Atu3022 at 15.283 kb on + strand, within Atu3022 at 15.336 kb on + strand, within Atu3022 at 15.351 kb on - strand, within Atu3022 at 15.362 kb on + strand at 15.367 kb on + strand at 15.370 kb on - strand at 15.372 kb on + strand at 15.558 kb on - strand, within Atu3023 at 15.566 kb on - strand, within Atu3023 at 15.579 kb on + strand, within Atu3023 at 15.631 kb on - strand, within Atu3023 at 15.680 kb on + strand, within Atu3023 at 15.688 kb on - strand, within Atu3023 at 15.688 kb on - strand, within Atu3023 at 15.715 kb on - strand, within Atu3023 at 15.716 kb on - strand, within Atu3023 at 15.737 kb on - strand, within Atu3023 at 15.760 kb on + strand, within Atu3023 at 15.798 kb on + strand, within Atu3023 at 15.846 kb on + strand, within Atu3023 at 15.871 kb on + strand, within Atu3023 at 15.879 kb on - strand, within Atu3023 at 15.981 kb on - strand, within Atu3023 at 16.027 kb on - strand, within Atu3023 at 16.086 kb on - strand, within Atu3023 at 16.171 kb on + strand, within Atu3023 at 16.209 kb on - strand, within Atu3023 at 16.231 kb on - strand, within Atu3023 at 16.291 kb on - strand at 16.343 kb on - strand at 16.357 kb on - strand at 16.367 kb on + strand at 16.414 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 13,545 - Atu3021 0.12 +0.9 13,547 - Atu3021 0.12 +1.4 13,659 + Atu3021 0.22 +0.3 13,665 - Atu3021 0.23 +1.0 13,667 + Atu3021 0.23 +0.9 13,671 + Atu3021 0.23 +1.0 13,722 - Atu3021 0.28 +1.0 13,838 + Atu3021 0.38 -0.6 13,846 - Atu3021 0.39 +1.0 13,920 + Atu3021 0.46 +0.9 13,990 - Atu3021 0.52 +1.2 14,051 - Atu3021 0.57 +0.8 14,061 - Atu3021 0.58 -0.1 14,158 + Atu3021 0.67 +0.7 14,198 - Atu3021 0.70 +1.2 14,198 - Atu3021 0.70 +1.2 14,200 + Atu3021 0.71 +0.2 14,221 - Atu3021 0.72 +1.4 14,221 - Atu3021 0.72 +1.6 14,493 - +0.9 14,509 + +0.4 14,563 - +0.8 14,655 + Atu3022 0.14 +0.7 14,794 + Atu3022 0.29 +0.4 14,794 + Atu3022 0.29 +1.1 14,800 + Atu3022 0.30 +1.1 14,800 + Atu3022 0.30 +0.8 14,848 + Atu3022 0.35 +1.6 14,856 - Atu3022 0.36 +0.7 14,861 - Atu3022 0.36 +1.1 14,863 + Atu3022 0.36 +0.6 14,863 + Atu3022 0.36 +0.1 14,863 + Atu3022 0.36 +0.5 14,866 - Atu3022 0.37 +0.4 14,869 - Atu3022 0.37 +0.9 14,871 - Atu3022 0.37 +0.9 14,871 - Atu3022 0.37 +0.6 14,919 - Atu3022 0.42 +1.2 14,990 + Atu3022 0.50 +0.2 15,055 + Atu3022 0.57 +0.7 15,158 + Atu3022 0.68 +1.4 15,158 + Atu3022 0.68 +0.4 15,183 + Atu3022 0.71 +1.0 15,191 - Atu3022 0.72 +0.3 15,283 + Atu3022 0.82 +0.5 15,336 + Atu3022 0.87 +1.1 15,351 - Atu3022 0.89 +1.1 15,362 + +0.6 15,367 + +0.5 15,370 - +1.9 15,372 + +1.7 15,558 - Atu3023 0.11 +0.8 15,566 - Atu3023 0.11 +0.6 15,579 + Atu3023 0.13 +0.4 15,631 - Atu3023 0.19 +1.1 15,680 + Atu3023 0.24 +0.5 15,688 - Atu3023 0.25 +1.2 15,688 - Atu3023 0.25 +0.3 15,715 - Atu3023 0.28 +0.9 15,716 - Atu3023 0.28 +1.4 15,737 - Atu3023 0.31 +0.5 15,760 + Atu3023 0.33 +0.8 15,798 + Atu3023 0.38 +0.3 15,846 + Atu3023 0.43 +1.3 15,871 + Atu3023 0.46 +0.3 15,879 - Atu3023 0.47 +0.7 15,981 - Atu3023 0.59 +1.6 16,027 - Atu3023 0.64 +1.4 16,086 - Atu3023 0.70 -0.1 16,171 + Atu3023 0.80 +0.6 16,209 - Atu3023 0.84 +0.6 16,231 - Atu3023 0.87 +1.0 16,291 - +0.5 16,343 - +0.9 16,357 - +0.0 16,367 + +0.8 16,414 - +0.9
Or see this region's nucleotide sequence