Strain Fitness in Agrobacterium fabrum C58 around Atu2565

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
2,535,870	-		Atu2563	0.42	-0.4
2,535,919	+		Atu2563	0.46	+0.1
2,535,919	+		Atu2563	0.46	+0.3
2,535,927	-		Atu2563	0.47	-0.1
2,535,927	-		Atu2563	0.47	-0.5
2,535,931	+		Atu2563	0.47	-0.2
2,536,059	-		Atu2563	0.59	-0.2
2,536,092	-		Atu2563	0.62	+0.5
2,536,239	+		Atu2563	0.76	-0.1
2,536,281	+		Atu2563	0.80	-0.1
2,536,293	-		Atu2563	0.81	+0.2
2,536,299	+		Atu2563	0.81	-0.0
2,536,299	+		Atu2563	0.81	+0.2
2,536,319	+		Atu2563	0.83	+0.9
2,536,368	+		Atu2563	0.88	-0.1
2,536,392	+				-0.2
2,536,418	-				+0.1
2,536,523	+		Atu2564	0.14	+0.4
2,536,563	-		Atu2564	0.24	+0.1
2,536,675	-		Atu2564	0.53	-0.1
2,536,724	+		Atu2564	0.65	-0.0
2,536,897	+				+0.2
2,536,942	-				+0.1
2,537,063	+		Atu2565	0.20	-0.1
2,537,081	-		Atu2565	0.21	+0.1
2,537,133	-		Atu2565	0.27	+0.2
2,537,159	-		Atu2565	0.29	+0.5
2,537,159	-		Atu2565	0.29	-0.1
2,537,204	+		Atu2565	0.34	+0.4
2,537,322	+		Atu2565	0.45	+0.2
2,537,448	+		Atu2565	0.58	+0.9
2,537,483	+		Atu2565	0.61	-0.1
2,537,506	+		Atu2565	0.64	+0.0
2,537,514	-		Atu2565	0.64	+0.6
2,537,524	+		Atu2565	0.65	+0.6
2,537,579	-		Atu2565	0.71	+0.3
2,537,582	+		Atu2565	0.71	+0.3
2,537,588	+		Atu2565	0.72	+0.7
2,537,597	-		Atu2565	0.73	+0.2
2,537,744	-		Atu2565	0.87	+0.7
2,537,789	+				+0.1
2,537,797	-				-0.1
2,537,823	+				-0.5
2,537,851	+				+0.2
2,537,933	+				-0.4
2,537,933	+				+0.0
2,537,985	-				-0.8
2,538,004	-				+0.1
2,538,010	-				+0.7
2,538,015	+				-0.0
2,538,037	+		Atu2566	0.10	-0.4
2,538,071	+		Atu2566	0.14	-1.2
2,538,113	+		Atu2566	0.20	-0.6
2,538,121	-		Atu2566	0.21	+0.1
2,538,121	-		Atu2566	0.21	+0.1
2,538,156	+		Atu2566	0.25	-0.0
2,538,360	-		Atu2566	0.52	+0.3
2,538,452	-		Atu2566	0.64	+0.0
2,538,452	-		Atu2566	0.64	+0.1
2,538,492	+		Atu2566	0.69	-0.1
2,538,534	+		Atu2566	0.74	+0.6
2,538,542	-		Atu2566	0.75	+0.1
2,538,691	-				+0.8
2,538,704	-				+0.4
2,538,724	+				+0.1
2,538,742	-				-0.2
2,538,742	-				-0.4
2,538,746	-				-0.2
2,538,769	-		Atu2567	0.16	+0.1
2,538,820	+		Atu2567	0.42	-0.1
2,538,832	-		Atu2567	0.48	-0.0
2,538,832	-		Atu2567	0.48	-0.1
2,538,867	-		Atu2567	0.66	+0.4