Strain Fitness in Agrobacterium fabrum C58 around Atu2205

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
2,175,085	-				+0.5
2,175,108	-				+1.2
2,175,225	+		Atu2203	0.21	+0.0
2,175,375	+		Atu2203	0.46	+0.5
2,175,390	+		Atu2203	0.49	-0.0
2,175,398	-		Atu2203	0.50	+0.4
2,175,398	-		Atu2203	0.50	+0.1
2,175,425	-		Atu2203	0.55	-0.1
2,175,425	-		Atu2203	0.55	+0.0
2,175,427	+		Atu2203	0.55	+0.5
2,175,469	-		Atu2203	0.62	-0.1
2,175,475	-		Atu2203	0.63	-0.0
2,175,568	+		Atu2203	0.78	+0.8
2,175,627	-		Atu2203	0.88	+0.1
2,175,754	-		Atu2204	0.19	+0.3
2,175,802	+		Atu2204	0.44	-0.8
2,175,883	-		Atu2204	0.87	-0.1
2,176,170	+		Atu2205	0.47	-0.8
2,176,278	+		Atu2205	0.68	-1.0
2,176,278	+		Atu2205	0.68	+0.5
2,176,278	+		Atu2205	0.68	-1.7
2,176,278	+		Atu2205	0.68	-1.0
2,177,180	+				-0.5
2,177,180	+				-0.0
2,177,188	-				-0.1