Strain Fitness in Agrobacterium fabrum C58 around Atu2120

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
2,082,919	-		Atu2119	0.25	-0.1
2,082,925	-		Atu2119	0.25	-0.8
2,083,005	+		Atu2119	0.31	-0.3
2,083,182	-		Atu2119	0.46	-0.4
2,083,182	-		Atu2119	0.46	-0.8
2,083,201	-		Atu2119	0.47	+0.6
2,083,202	-		Atu2119	0.47	+0.4
2,083,276	+		Atu2119	0.53	+0.1
2,083,286	+		Atu2119	0.54	+3.5
2,083,312	+		Atu2119	0.56	-0.2
2,083,454	+		Atu2119	0.67	-0.1
2,083,459	+		Atu2119	0.68	+1.6
2,083,462	-		Atu2119	0.68	-0.1
2,083,518	+		Atu2119	0.72	-0.1
2,083,531	-		Atu2119	0.73	-0.7
2,083,603	+		Atu2119	0.79	+0.2
2,083,603	+		Atu2119	0.79	+0.0
2,083,628	-		Atu2119	0.81	-0.2
2,083,638	-		Atu2119	0.82	+0.1
2,083,774	+				+0.6
2,083,782	-				-0.5
2,083,839	+				-0.2
2,083,892	-				-1.3
2,083,894	-				-0.7
2,083,909	-				-0.6
2,084,092	+		Atu2120	0.27	+0.8
2,084,095	-		Atu2120	0.27	+0.4
2,084,171	-		Atu2120	0.39	-0.1
2,084,225	+		Atu2120	0.47	-0.1
2,084,265	-		Atu2120	0.53	-0.0
2,084,513	+				+0.1
2,084,670	-				-0.5
2,084,886	-		Atu2121	0.17	-0.0
2,084,965	+		Atu2121	0.26	+1.0
2,084,973	-		Atu2121	0.27	-0.3
2,084,981	-		Atu2121	0.28	-0.0
2,085,024	-		Atu2121	0.33	+0.1
2,085,102	+		Atu2121	0.42	-0.0
2,085,149	-		Atu2121	0.48	+0.1
2,085,291	+		Atu2121	0.64	-1.5
2,085,293	-		Atu2121	0.65	+0.1
2,085,335	+		Atu2121	0.70	+0.1
2,085,404	+		Atu2121	0.78	-0.3
2,085,404	+		Atu2121	0.78	-0.4
2,085,465	+		Atu2121	0.85	-0.2
2,085,502	+		Atu2121	0.89	-2.4