Strain Fitness in Agrobacterium fabrum C58 around Atu1896

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
1,872,304	-				-0.4
1,872,322	+				+0.0
1,872,330	-				+0.6
1,872,344	-				+0.2
1,872,447	+				-0.0
1,872,447	+				-0.5
1,872,447	+				+0.6
1,872,584	+		Atu1895	0.18	-0.6
1,872,600	-		Atu1895	0.20	+0.3
1,872,643	+		Atu1895	0.27	-0.2
1,872,708	+		Atu1895	0.37	+0.2
1,872,897	+		Atu1895	0.67	+0.0
1,872,915	+		Atu1895	0.69	-0.1
1,873,018	+		Atu1895	0.86	-0.1
1,873,104	+				-0.6
1,873,104	+				+0.2
1,873,112	-				-1.7
1,873,112	-				-0.5
1,873,112	-				-0.3
1,873,112	-				-0.1
1,873,148	+				+0.4
1,873,166	-				+0.1
1,873,207	+				-0.9
1,873,258	-		Atu1896	0.24	+0.0
1,873,306	-		Atu1896	0.47	+0.7
1,873,344	+		Atu1896	0.65	+0.7
1,873,355	+		Atu1896	0.71	+0.1
1,873,377	-		Atu1896	0.81	-0.1
1,873,429	-				+1.1
1,873,464	-				-0.5
1,873,465	-				-1.0
1,873,589	-		Atu1897	0.21	-0.2
1,873,589	-		Atu1897	0.21	+0.9
1,873,611	-		Atu1897	0.24	-0.3
1,873,619	-		Atu1897	0.25	+0.2
1,873,830	+		Atu1897	0.51	-0.4
1,873,920	-		Atu1897	0.63	+0.4
1,874,101	+		Atu1897	0.86	-0.6
1,874,109	-		Atu1897	0.87	+0.4
1,874,145	+				+1.7
1,874,354	-				+0.6
1,874,354	-				+0.1