Strain Fitness in Agrobacterium fabrum C58 around Atu1851

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
1,831,699	+		Atu1850	0.78	-1.6
1,832,419	+		Atu1851	0.86	-0.3
1,832,427	-				+0.3
1,832,427	-				+0.4
1,832,427	-				-0.7
1,832,427	-				+1.0
1,832,432	-				-0.5
1,832,435	-				-0.7
1,832,547	+				-0.0
1,832,555	-				-0.1
1,832,574	-				+0.3
1,832,578	-				+0.6
1,832,629	-				+0.4
1,832,786	-		Atu1852	0.18	-0.8
1,832,862	-		Atu1852	0.24	-1.0
1,832,958	-		Atu1852	0.33	+1.1
1,833,057	-		Atu1852	0.41	-0.3
1,833,059	+		Atu1852	0.42	-0.4
1,833,110	-		Atu1852	0.46	+0.2
1,833,112	+		Atu1852	0.46	-0.1
1,833,124	+		Atu1852	0.47	+0.0
1,833,147	+		Atu1852	0.49	-0.1
1,833,222	+		Atu1852	0.56	+0.1
1,833,237	+		Atu1852	0.57	+0.7
1,833,279	-		Atu1852	0.61	-0.3
1,833,306	-		Atu1852	0.63	-0.0
1,833,371	-		Atu1852	0.69	-0.1
1,833,430	-		Atu1852	0.74	+0.1