Strain Fitness in Agrobacterium fabrum C58 around Atu1339

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
1,322,942	-				-0.1
1,322,966	+				-0.2
1,323,099	+		Atu1338	0.16	-0.2
1,323,143	+		Atu1338	0.23	+0.0
1,323,153	+		Atu1338	0.24	-0.2
1,323,153	+		Atu1338	0.24	-0.3
1,323,222	+		Atu1338	0.34	-0.2
1,323,384	+		Atu1338	0.57	+0.1
1,323,631	+				-0.6
1,323,633	+				-0.3
1,323,639	-				-0.1
1,323,641	-				-0.0
1,323,641	-				+0.2
1,323,641	-				+0.1
1,323,653	+				+0.2
1,323,934	-				-0.1
1,324,051	-				-0.1
1,324,185	+		Atu1339	0.13	+0.4
1,324,191	-		Atu1339	0.13	-0.3
1,324,234	+		Atu1339	0.15	-0.7
1,324,479	-		Atu1339	0.23	-1.3
1,327,257	+				-0.4
1,327,280	+				+0.3
1,327,288	+				-0.1
1,327,289	-				+0.2
1,327,329	+				-0.6