Strain Fitness in Agrobacterium fabrum C58 around Atu1236

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
1,223,335	-		Atu1235	0.21	+0.0
1,223,522	-		Atu1235	0.36	-0.3
1,223,557	+		Atu1235	0.39	+0.1
1,223,564	-		Atu1235	0.39	+0.1
1,223,669	+		Atu1235	0.48	+0.4
1,223,677	-		Atu1235	0.48	+0.6
1,223,722	+		Atu1235	0.52	+0.6
1,223,722	+		Atu1235	0.52	+0.4
1,223,722	+		Atu1235	0.52	+0.2
1,223,730	-		Atu1235	0.53	+0.6
1,223,730	-		Atu1235	0.53	+0.4
1,223,730	-		Atu1235	0.53	+0.3
1,223,730	-		Atu1235	0.53	+0.6
1,223,730	-		Atu1235	0.53	+0.7
1,223,730	-		Atu1235	0.53	+0.5
1,223,730	-		Atu1235	0.53	+0.2
1,223,848	+		Atu1235	0.62	+0.3
1,223,854	+		Atu1235	0.63	+0.5
1,223,863	+		Atu1235	0.63	+0.6
1,223,863	-		Atu1235	0.63	-1.0
1,223,898	+		Atu1235	0.66	+1.3
1,224,032	+		Atu1235	0.77	+0.0
1,224,266	+				+0.1
1,224,266	+				-0.8
1,224,274	-				-0.2
1,224,311	+				-0.3
1,224,395	+				-0.2
1,224,403	-				+1.0
1,224,469	-		Atu1236	0.10	+0.2
1,224,494	-		Atu1236	0.12	+0.2
1,224,592	-		Atu1236	0.18	+0.7
1,224,671	-		Atu1236	0.23	+0.2
1,224,671	-		Atu1236	0.23	+0.2
1,224,713	+		Atu1236	0.26	+0.4
1,224,750	-		Atu1236	0.28	-0.9
1,224,861	-		Atu1236	0.35	+0.7
1,224,873	+		Atu1236	0.36	+0.7
1,224,881	-		Atu1236	0.37	+1.1
1,224,881	-		Atu1236	0.37	+0.3
1,224,943	+		Atu1236	0.41	+0.3
1,225,076	-		Atu1236	0.49	+0.4
1,225,153	-		Atu1236	0.54	-0.1
1,225,253	+		Atu1236	0.60	-0.3
1,225,263	-		Atu1236	0.61	+0.8
1,225,404	-		Atu1236	0.70	+0.4
1,225,566	+		Atu1236	0.81	+0.2
1,225,573	+		Atu1236	0.81	+0.6
1,225,576	-		Atu1236	0.81	+0.8
1,225,606	+		Atu1236	0.83	-0.5
1,225,854	-				+0.1
1,225,856	+				+0.4
1,225,864	-				+0.4
1,225,881	+				+0.0
1,225,891	-				+0.3
1,225,964	+				+0.1
1,225,972	-				+0.0
1,225,982	-				-1.2
1,225,983	-				-0.5
1,226,214	+		Atu1237	0.10	+0.4
1,226,214	+		Atu1237	0.10	-0.0
1,226,273	+		Atu1237	0.15	+2.0
1,226,352	+		Atu1237	0.22	-0.1
1,226,360	-		Atu1237	0.23	+0.0
1,226,379	+		Atu1237	0.24	+0.3
1,226,389	+		Atu1237	0.25	-0.2
1,226,413	+		Atu1237	0.27	+0.2
1,226,421	-		Atu1237	0.28	+0.0
1,226,492	+		Atu1237	0.34	+0.3
1,226,499	-		Atu1237	0.35	+0.4
1,226,589	-		Atu1237	0.42	+0.3
1,226,665	+		Atu1237	0.49	+1.5
1,226,665	-		Atu1237	0.49	+0.1
1,226,667	+		Atu1237	0.49	-1.0
1,226,830	+		Atu1237	0.63	+0.3
1,226,847	+		Atu1237	0.64	+0.1
1,226,855	-		Atu1237	0.65	+0.3
1,226,855	-		Atu1237	0.65	+0.5
1,226,860	-		Atu1237	0.65	-0.1
1,226,865	-		Atu1237	0.66	-0.1