Strain Fitness in Agrobacterium fabrum C58 around Atu1049

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
1,042,106	+				+2.0
1,042,114	-				+1.0
1,042,114	-				+0.2
1,042,140	+				+0.4
1,042,140	+				+2.0
1,042,165	+				+0.2
1,042,188	-				+0.4
1,042,189	+				+0.4
1,042,189	+				+0.2
1,042,194	+				+0.0
1,042,197	-				+0.2
1,042,293	+		Atu1048	0.21	-0.4
1,042,301	-		Atu1048	0.22	+0.1
1,042,301	-		Atu1048	0.22	+0.3
1,042,318	-		Atu1048	0.24	-0.2
1,042,359	-		Atu1048	0.29	+0.1
1,042,364	+		Atu1048	0.30	-0.3
1,042,372	-		Atu1048	0.31	+0.7
1,042,372	-		Atu1048	0.31	-0.4
1,042,537	-		Atu1048	0.51	-0.2
1,042,828	-		Atu1048	0.86	+0.2
1,042,853	+		Atu1048	0.89	+0.0
1,042,885	-				-0.3
1,043,048	-				-1.4
1,043,130	+		Atu1049	0.20	+0.0
1,043,262	+		Atu1049	0.40	-0.2
1,043,355	+		Atu1049	0.53	+0.2
1,043,431	+		Atu1049	0.64	+0.6
1,043,431	+		Atu1049	0.64	+0.3
1,043,431	+		Atu1049	0.64	+2.1
1,043,431	+		Atu1049	0.64	-0.3
1,043,482	+		Atu1049	0.72	+0.5
1,043,548	+		Atu1049	0.81	+0.2
1,043,560	+		Atu1049	0.83	+0.2
1,043,631	-				-0.0
1,043,758	+				+0.7
1,043,856	-				+0.0
1,043,861	-				+0.1
1,043,868	-				+0.3
1,043,895	-				-0.0
1,044,003	+		Atu1050	0.18	+0.2
1,044,021	-		Atu1050	0.21	-0.4
1,044,028	+		Atu1050	0.21	+0.5
1,044,036	-		Atu1050	0.22	+0.6
1,044,036	-		Atu1050	0.22	+0.3
1,044,061	+		Atu1050	0.25	-0.5
1,044,120	-		Atu1050	0.33	+1.3
1,044,193	+		Atu1050	0.41	+0.3
1,044,193	+		Atu1050	0.41	-0.0
1,044,201	-		Atu1050	0.42	-0.1
1,044,268	-		Atu1050	0.51	-0.0
1,044,268	-		Atu1050	0.51	+0.0
1,044,288	-		Atu1050	0.53	-0.5
1,044,331	-		Atu1050	0.58	+0.1
1,044,331	-		Atu1050	0.58	-0.8
1,044,343	+		Atu1050	0.60	+0.2
1,044,351	-		Atu1050	0.61	+0.1
1,044,429	-		Atu1050	0.70	+0.0
1,044,429	-		Atu1050	0.70	-0.4
1,044,674	+				+0.3