Strain Fitness in Agrobacterium fabrum C58 around Atu0435

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
429,811	-		Atu0434	0.27	-1.0
430,141	+		Atu0434	0.57	-0.2
430,405	+		Atu0434	0.81	-1.9
430,665	+				+0.3
430,680	+				-0.3
430,717	+		Atu0435	0.54	+0.8
430,725	-		Atu0435	0.65	+0.2
430,856	-				+0.2
430,875	+				-0.2
430,875	+				+0.9
430,875	+				+0.4
430,883	-				+1.3
430,929	-				+0.4
430,940	-				-0.3
431,009	-				-0.3
431,100	-				-0.3
431,125	-				+0.0
431,145	+				-0.9
431,147	-				-0.2
431,147	-				-0.2
431,161	+				+0.1
431,169	-				-1.5
431,191	-				-1.2
431,271	+		Atu0436	0.13	+0.6
431,327	+		Atu0436	0.15	-0.3
431,420	-		Atu0436	0.20	-0.1
431,739	+		Atu0436	0.35	+1.0