Strain Fitness in Agrobacterium fabrum C58 around Atu0081

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
82,429	+				-0.5
82,434	+				-0.1
82,439	+				-0.3
82,439	+				+0.1
82,439	+				-0.7
82,581	+		Atu0080	0.23	+0.0
82,612	+		Atu0080	0.26	-0.0
82,677	+		Atu0080	0.33	-0.0
82,794	-		Atu0080	0.46	-0.1
83,007	-		Atu0080	0.68	-0.6
83,054	-		Atu0080	0.73	+0.0
83,135	-		Atu0080	0.82	-0.1
83,165	-		Atu0080	0.85	-0.1
83,357	+				-0.3
83,461	+		Atu0081	0.15	-2.0
83,477	+		Atu0081	0.16	-0.3
83,478	+		Atu0081	0.16	+0.2
83,486	-		Atu0081	0.17	-0.7
83,486	-		Atu0081	0.17	+0.3
83,652	-		Atu0081	0.33	+0.2
83,715	+		Atu0081	0.40	-1.1
83,723	-		Atu0081	0.40	+0.0
83,780	+		Atu0081	0.46	-0.8
83,825	+		Atu0081	0.50	+0.5
83,864	-		Atu0081	0.54	-1.0
83,968	+		Atu0081	0.64	-0.1
83,976	-		Atu0081	0.65	+0.2
84,081	-		Atu0081	0.76	+0.3
84,090	+		Atu0081	0.76	+0.5
84,126	+		Atu0081	0.80	+0.3
84,133	-		Atu0081	0.81	-0.5
84,139	+		Atu0081	0.81	+0.0
84,147	-		Atu0081	0.82	-0.8
84,158	-		Atu0081	0.83	+0.1
84,462	+				+0.4