Strain Fitness in Agrobacterium fabrum C58 around Atu0026

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0024 and Atu0025 overlap by 4 nucleotidesAtu0025 and Atu0026 are separated by 14 nucleotidesAtu0026 and Atu0027 overlap by 4 nucleotides Atu0024: Atu0024 - hypothetical protein, at 23,586 to 26,771 Atu0024 Atu0025: Atu0025 - hypothetical protein, at 26,768 to 27,505 Atu0025 Atu0026: Atu0026 - hypothetical protein, at 27,520 to 29,031 Atu0026 Atu0027: Atu0027 - two component sensor kinase, at 29,028 to 31,673 Atu0027 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -1 0 1at 26.922 kb on - strand, within Atu0025at 26.973 kb on + strand, within Atu0025at 27.124 kb on + strand, within Atu0025at 27.309 kb on - strand, within Atu0025at 28.247 kb on - strand, within Atu0026

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
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26,922 - Atu0025 0.21 +0.5
26,973 + Atu0025 0.28 +0.2
27,124 + Atu0025 0.48 +0.2
27,309 - Atu0025 0.73 -0.6
28,247 - Atu0026 0.48 +0.4

Or see this region's nucleotide sequence