Strain Fitness in Agrobacterium fabrum C58 around Atu5129

Experiment: Methyl beta-D-glucopyranoside (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5127 and Atu5128 overlap by 11 nucleotidesAtu5128 and Atu5129 are separated by 27 nucleotidesAtu5129 and Atu5130 overlap by 65 nucleotidesAtu5130 and Atu5131 are separated by 124 nucleotides Atu5127: Atu5127 - ABC transporter membrane spanning protein (mannopine), at 134,369 to 135,271 Atu5127 Atu5128: Atu5128 - ABC transporter membrane spanning protein (mannopine), at 135,261 to 136,118 Atu5128 Atu5129: Atu5129 - ABC transporter substrate binding protein (mannopine), at 136,146 to 137,228 Atu5129 Atu5130: Atu5130 - attachment protein, at 137,164 to 137,454 Atu5130 Atu5131: Atu5131 - ABC transporter nucleotide binding/ATPase, at 137,579 to 138,373 Atu5131 Position (kb) 136 137 138Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 135.147 kb on - strand, within Atu5127at 135.157 kb on - strand, within Atu5127at 135.165 kb on - strand, within Atu5127at 135.179 kb on + strand, within Atu5127at 135.187 kb on - strandat 135.194 kb on - strandat 135.251 kb on + strandat 135.251 kb on + strandat 135.251 kb on + strandat 135.256 kb on + strandat 135.259 kb on - strandat 135.259 kb on - strandat 135.314 kb on + strandat 135.322 kb on - strandat 135.323 kb on + strandat 135.350 kb on + strand, within Atu5128at 135.350 kb on + strand, within Atu5128at 135.350 kb on + strand, within Atu5128at 135.350 kb on + strand, within Atu5128at 135.350 kb on + strand, within Atu5128at 135.358 kb on - strand, within Atu5128at 135.358 kb on - strand, within Atu5128at 135.358 kb on - strand, within Atu5128at 135.358 kb on - strand, within Atu5128at 135.358 kb on - strand, within Atu5128at 135.401 kb on + strand, within Atu5128at 135.417 kb on + strand, within Atu5128at 135.425 kb on - strand, within Atu5128at 135.427 kb on + strand, within Atu5128at 135.459 kb on + strand, within Atu5128at 135.467 kb on - strand, within Atu5128at 135.481 kb on + strand, within Atu5128at 135.637 kb on + strand, within Atu5128at 135.637 kb on + strand, within Atu5128at 135.645 kb on - strand, within Atu5128at 135.645 kb on - strand, within Atu5128at 135.651 kb on - strand, within Atu5128at 135.672 kb on + strand, within Atu5128at 135.680 kb on - strand, within Atu5128at 135.702 kb on + strand, within Atu5128at 135.720 kb on - strand, within Atu5128at 135.746 kb on - strand, within Atu5128at 135.753 kb on + strand, within Atu5128at 135.753 kb on + strand, within Atu5128at 135.753 kb on + strand, within Atu5128at 135.753 kb on + strand, within Atu5128at 135.753 kb on + strand, within Atu5128at 135.753 kb on + strand, within Atu5128at 135.755 kb on - strand, within Atu5128at 135.761 kb on - strand, within Atu5128at 135.761 kb on - strand, within Atu5128at 135.761 kb on - strand, within Atu5128at 135.787 kb on + strand, within Atu5128at 135.787 kb on + strand, within Atu5128at 135.787 kb on + strand, within Atu5128at 135.795 kb on + strand, within Atu5128at 135.802 kb on + strand, within Atu5128at 135.828 kb on + strand, within Atu5128at 135.836 kb on - strand, within Atu5128at 135.886 kb on - strand, within Atu5128at 135.886 kb on - strand, within Atu5128at 136.076 kb on + strandat 136.099 kb on - strandat 136.100 kb on - strandat 136.109 kb on - strandat 136.119 kb on + strandat 136.119 kb on - strandat 136.119 kb on - strandat 136.121 kb on - strandat 136.153 kb on + strandat 136.207 kb on + strandat 136.225 kb on + strandat 136.310 kb on - strand, within Atu5129at 136.320 kb on - strand, within Atu5129at 136.321 kb on - strand, within Atu5129at 136.371 kb on + strand, within Atu5129at 136.393 kb on + strand, within Atu5129at 136.418 kb on - strand, within Atu5129at 136.428 kb on - strand, within Atu5129at 136.475 kb on - strand, within Atu5129at 136.480 kb on + strand, within Atu5129at 136.487 kb on - strand, within Atu5129at 136.527 kb on - strand, within Atu5129at 136.535 kb on - strand, within Atu5129at 136.580 kb on - strand, within Atu5129at 136.630 kb on - strand, within Atu5129at 136.698 kb on + strand, within Atu5129at 136.706 kb on - strand, within Atu5129at 136.710 kb on + strand, within Atu5129at 136.710 kb on + strand, within Atu5129at 136.792 kb on + strand, within Atu5129at 136.796 kb on - strand, within Atu5129at 136.798 kb on + strand, within Atu5129at 136.798 kb on + strand, within Atu5129at 136.798 kb on + strand, within Atu5129at 136.798 kb on + strand, within Atu5129at 136.798 kb on + strand, within Atu5129at 136.806 kb on + strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.806 kb on - strand, within Atu5129at 136.883 kb on - strand, within Atu5129at 136.900 kb on - strand, within Atu5129at 137.039 kb on + strand, within Atu5129at 137.042 kb on - strand, within Atu5129at 137.047 kb on - strand, within Atu5129at 137.055 kb on + strand, within Atu5129at 137.078 kb on - strand, within Atu5129at 137.118 kb on + strand, within Atu5129at 137.128 kb on - strandat 137.128 kb on - strandat 137.128 kb on - strandat 137.166 kb on - strandat 137.169 kb on + strandat 137.177 kb on - strandat 137.189 kb on + strandat 137.194 kb on + strandat 137.255 kb on + strand, within Atu5130at 137.328 kb on + strand, within Atu5130at 137.336 kb on - strand, within Atu5130at 137.338 kb on + strand, within Atu5130at 137.346 kb on - strand, within Atu5130at 137.398 kb on + strand, within Atu5130at 137.413 kb on - strand, within Atu5130at 137.457 kb on - strandat 137.464 kb on + strandat 137.480 kb on - strandat 137.536 kb on + strandat 137.536 kb on + strandat 137.538 kb on + strandat 137.566 kb on - strandat 137.622 kb on + strandat 137.622 kb on + strandat 137.630 kb on - strandat 137.630 kb on - strandat 137.630 kb on - strandat 137.664 kb on + strand, within Atu5131at 137.719 kb on - strand, within Atu5131at 137.774 kb on + strand, within Atu5131at 137.782 kb on - strand, within Atu5131at 137.784 kb on + strand, within Atu5131at 137.815 kb on - strand, within Atu5131at 137.822 kb on - strand, within Atu5131at 137.881 kb on - strand, within Atu5131at 137.882 kb on - strand, within Atu5131at 137.980 kb on - strand, within Atu5131at 137.987 kb on - strand, within Atu5131at 138.054 kb on + strand, within Atu5131at 138.120 kb on + strand, within Atu5131at 138.120 kb on + strand, within Atu5131at 138.128 kb on - strand, within Atu5131at 138.133 kb on + strand, within Atu5131at 138.173 kb on - strand, within Atu5131at 138.188 kb on + strand, within Atu5131at 138.196 kb on - strand, within Atu5131

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Per-strain Table

Position Strand Gene LocusTag Fraction Methyl beta-D-glucopyranoside (C)
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135,147 - Atu5127 0.86 +3.8
135,157 - Atu5127 0.87 -0.6
135,165 - Atu5127 0.88 -0.1
135,179 + Atu5127 0.90 -2.1
135,187 - +0.7
135,194 - +0.2
135,251 + +1.2
135,251 + +0.2
135,251 + -0.3
135,256 + -0.4
135,259 - +0.3
135,259 - -1.1
135,314 + +0.3
135,322 - +0.3
135,323 + +0.2
135,350 + Atu5128 0.10 +1.2
135,350 + Atu5128 0.10 +0.5
135,350 + Atu5128 0.10 +0.2
135,350 + Atu5128 0.10 +1.5
135,350 + Atu5128 0.10 +0.3
135,358 - Atu5128 0.11 -0.1
135,358 - Atu5128 0.11 +0.1
135,358 - Atu5128 0.11 +0.7
135,358 - Atu5128 0.11 -0.3
135,358 - Atu5128 0.11 +0.4
135,401 + Atu5128 0.16 +0.6
135,417 + Atu5128 0.18 -0.2
135,425 - Atu5128 0.19 +0.7
135,427 + Atu5128 0.19 +0.2
135,459 + Atu5128 0.23 +0.1
135,467 - Atu5128 0.24 +0.9
135,481 + Atu5128 0.26 +1.0
135,637 + Atu5128 0.44 +0.6
135,637 + Atu5128 0.44 -0.4
135,645 - Atu5128 0.45 -0.4
135,645 - Atu5128 0.45 +0.5
135,651 - Atu5128 0.45 +1.2
135,672 + Atu5128 0.48 +0.3
135,680 - Atu5128 0.49 +2.0
135,702 + Atu5128 0.51 +0.2
135,720 - Atu5128 0.53 +0.5
135,746 - Atu5128 0.57 -0.4
135,753 + Atu5128 0.57 +0.1
135,753 + Atu5128 0.57 +1.9
135,753 + Atu5128 0.57 -0.7
135,753 + Atu5128 0.57 +0.1
135,753 + Atu5128 0.57 +0.3
135,753 + Atu5128 0.57 -0.2
135,755 - Atu5128 0.58 -0.1
135,761 - Atu5128 0.58 +1.0
135,761 - Atu5128 0.58 +0.1
135,761 - Atu5128 0.58 -2.7
135,787 + Atu5128 0.61 +1.0
135,787 + Atu5128 0.61 +0.2
135,787 + Atu5128 0.61 -0.0
135,795 + Atu5128 0.62 +0.5
135,802 + Atu5128 0.63 +0.7
135,828 + Atu5128 0.66 -0.5
135,836 - Atu5128 0.67 +0.8
135,886 - Atu5128 0.73 -0.2
135,886 - Atu5128 0.73 +0.2
136,076 + -0.5
136,099 - +0.3
136,100 - +0.2
136,109 - -0.1
136,119 + -0.6
136,119 - +1.9
136,119 - +0.6
136,121 - +1.2
136,153 + +0.3
136,207 + +0.7
136,225 + +1.5
136,310 - Atu5129 0.15 +0.8
136,320 - Atu5129 0.16 +0.8
136,321 - Atu5129 0.16 +1.5
136,371 + Atu5129 0.21 +1.2
136,393 + Atu5129 0.23 +0.1
136,418 - Atu5129 0.25 +0.5
136,428 - Atu5129 0.26 +0.8
136,475 - Atu5129 0.30 +0.1
136,480 + Atu5129 0.31 -0.5
136,487 - Atu5129 0.31 -0.6
136,527 - Atu5129 0.35 +0.6
136,535 - Atu5129 0.36 +0.1
136,580 - Atu5129 0.40 -0.1
136,630 - Atu5129 0.45 +0.3
136,698 + Atu5129 0.51 -1.1
136,706 - Atu5129 0.52 +2.2
136,710 + Atu5129 0.52 +0.4
136,710 + Atu5129 0.52 +1.4
136,792 + Atu5129 0.60 +0.2
136,796 - Atu5129 0.60 +2.5
136,798 + Atu5129 0.60 -0.1
136,798 + Atu5129 0.60 +0.2
136,798 + Atu5129 0.60 +0.2
136,798 + Atu5129 0.60 +0.7
136,798 + Atu5129 0.60 -0.2
136,806 + Atu5129 0.61 +0.7
136,806 - Atu5129 0.61 +0.4
136,806 - Atu5129 0.61 +0.3
136,806 - Atu5129 0.61 +0.4
136,806 - Atu5129 0.61 -0.6
136,806 - Atu5129 0.61 -0.4
136,806 - Atu5129 0.61 +0.3
136,806 - Atu5129 0.61 +0.1
136,806 - Atu5129 0.61 +0.1
136,806 - Atu5129 0.61 -0.1
136,806 - Atu5129 0.61 +0.9
136,806 - Atu5129 0.61 +2.6
136,883 - Atu5129 0.68 +0.6
136,900 - Atu5129 0.70 -0.7
137,039 + Atu5129 0.82 +0.0
137,042 - Atu5129 0.83 +0.5
137,047 - Atu5129 0.83 +1.2
137,055 + Atu5129 0.84 -0.3
137,078 - Atu5129 0.86 +0.1
137,118 + Atu5129 0.90 -0.8
137,128 - -0.1
137,128 - +0.5
137,128 - +0.4
137,166 - -1.6
137,169 + +0.6
137,177 - -0.5
137,189 + +1.1
137,194 + -0.1
137,255 + Atu5130 0.31 -0.7
137,328 + Atu5130 0.56 +1.3
137,336 - Atu5130 0.59 +0.9
137,338 + Atu5130 0.60 -0.3
137,346 - Atu5130 0.63 +1.1
137,398 + Atu5130 0.80 +0.5
137,413 - Atu5130 0.86 -0.1
137,457 - +0.2
137,464 + +0.1
137,480 - +0.6
137,536 + +0.2
137,536 + -0.9
137,538 + -1.4
137,566 - +0.8
137,622 + +0.1
137,622 + +0.6
137,630 - -1.3
137,630 - +1.4
137,630 - +0.1
137,664 + Atu5131 0.11 +0.9
137,719 - Atu5131 0.18 -0.4
137,774 + Atu5131 0.25 -0.4
137,782 - Atu5131 0.26 -1.1
137,784 + Atu5131 0.26 -0.1
137,815 - Atu5131 0.30 -0.3
137,822 - Atu5131 0.31 +0.5
137,881 - Atu5131 0.38 -0.3
137,882 - Atu5131 0.38 +0.9
137,980 - Atu5131 0.50 +0.4
137,987 - Atu5131 0.51 -0.9
138,054 + Atu5131 0.60 +0.7
138,120 + Atu5131 0.68 -0.0
138,120 + Atu5131 0.68 +0.5
138,128 - Atu5131 0.69 +0.6
138,133 + Atu5131 0.70 -0.3
138,173 - Atu5131 0.75 +0.8
138,188 + Atu5131 0.77 +1.1
138,196 - Atu5131 0.78 +0.6

Or see this region's nucleotide sequence