Experiment: Methyl beta-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3180 and Atu3181 are separated by 300 nucleotides Atu3181 and Atu3182 are separated by 78 nucleotides Atu3182 and Atu3183 are separated by 97 nucleotides Atu3183 and Atu3184 overlap by 4 nucleotides
Atu3180: Atu3180 - ABC transporter permease, at 189,910 to 190,743
Atu3180
Atu3181: Atu3181 - hypothetical protein, at 191,044 to 192,246
Atu3181
Atu3182: Atu3182 - hypothetical protein, at 192,325 to 192,762
Atu3182
Atu3183: Atu3183 - hypothetical protein, at 192,860 to 193,129
Atu3183
Atu3184: Atu3184 - hypothetical protein, at 193,126 to 194,169
Atu3184
Position (kb) 191
192
193 Strain fitness (log2 ratio) -2
-1
0
1 at 190.117 kb on - strand, within Atu3180 at 190.139 kb on - strand, within Atu3180 at 190.172 kb on - strand, within Atu3180 at 190.208 kb on + strand, within Atu3180 at 190.217 kb on - strand, within Atu3180 at 190.234 kb on + strand, within Atu3180 at 190.268 kb on + strand, within Atu3180 at 190.295 kb on - strand, within Atu3180 at 190.397 kb on + strand, within Atu3180 at 190.504 kb on + strand, within Atu3180 at 190.542 kb on + strand, within Atu3180 at 190.603 kb on - strand, within Atu3180 at 190.654 kb on + strand, within Atu3180 at 190.664 kb on + strand at 190.669 kb on + strand at 190.678 kb on + strand at 190.678 kb on + strand at 190.861 kb on + strand at 190.861 kb on + strand at 190.861 kb on + strand at 190.869 kb on - strand at 190.869 kb on - strand at 190.878 kb on + strand at 190.886 kb on - strand at 191.027 kb on - strand at 191.076 kb on - strand at 191.204 kb on + strand, within Atu3181 at 191.230 kb on - strand, within Atu3181 at 191.285 kb on + strand, within Atu3181 at 191.378 kb on + strand, within Atu3181 at 191.427 kb on + strand, within Atu3181 at 191.553 kb on + strand, within Atu3181 at 191.555 kb on - strand, within Atu3181 at 191.759 kb on + strand, within Atu3181 at 191.759 kb on + strand, within Atu3181 at 191.767 kb on + strand, within Atu3181 at 191.789 kb on + strand, within Atu3181 at 191.837 kb on + strand, within Atu3181 at 191.912 kb on - strand, within Atu3181 at 191.935 kb on - strand, within Atu3181 at 191.958 kb on - strand, within Atu3181 at 192.000 kb on + strand, within Atu3181 at 192.007 kb on + strand, within Atu3181 at 192.015 kb on - strand, within Atu3181 at 192.065 kb on + strand, within Atu3181 at 192.178 kb on - strand at 192.178 kb on - strand at 192.235 kb on - strand at 192.235 kb on - strand at 192.265 kb on + strand at 192.284 kb on + strand at 192.365 kb on + strand at 192.372 kb on - strand, within Atu3182 at 192.466 kb on + strand, within Atu3182 at 192.466 kb on + strand, within Atu3182 at 192.500 kb on + strand, within Atu3182 at 192.541 kb on + strand, within Atu3182 at 192.743 kb on + strand at 193.005 kb on + strand, within Atu3183 at 193.124 kb on + strand at 193.124 kb on + strand at 193.163 kb on + strand at 193.215 kb on - strand at 193.220 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl beta-D-glucopyranoside (C) remove 190,117 - Atu3180 0.25 +0.1 190,139 - Atu3180 0.27 +0.1 190,172 - Atu3180 0.31 +0.1 190,208 + Atu3180 0.36 +0.6 190,217 - Atu3180 0.37 +0.3 190,234 + Atu3180 0.39 -1.9 190,268 + Atu3180 0.43 +0.1 190,295 - Atu3180 0.46 -0.8 190,397 + Atu3180 0.58 +0.9 190,504 + Atu3180 0.71 -0.3 190,542 + Atu3180 0.76 +0.1 190,603 - Atu3180 0.83 +0.2 190,654 + Atu3180 0.89 -0.4 190,664 + +0.8 190,669 + +0.7 190,678 + +0.5 190,678 + +0.1 190,861 + +1.5 190,861 + -0.0 190,861 + +0.4 190,869 - +0.2 190,869 - -0.0 190,878 + +0.2 190,886 - -0.6 191,027 - -0.2 191,076 - +0.0 191,204 + Atu3181 0.13 -0.1 191,230 - Atu3181 0.15 +0.1 191,285 + Atu3181 0.20 +0.0 191,378 + Atu3181 0.28 +0.4 191,427 + Atu3181 0.32 +0.4 191,553 + Atu3181 0.42 +0.3 191,555 - Atu3181 0.42 -1.2 191,759 + Atu3181 0.59 +0.8 191,759 + Atu3181 0.59 +0.3 191,767 + Atu3181 0.60 +0.8 191,789 + Atu3181 0.62 -0.1 191,837 + Atu3181 0.66 +0.2 191,912 - Atu3181 0.72 +0.2 191,935 - Atu3181 0.74 -1.0 191,958 - Atu3181 0.76 -0.2 192,000 + Atu3181 0.79 -0.2 192,007 + Atu3181 0.80 +0.5 192,015 - Atu3181 0.81 +1.6 192,065 + Atu3181 0.85 -0.1 192,178 - -0.3 192,178 - +0.2 192,235 - -0.0 192,235 - -0.6 192,265 + -0.2 192,284 + -0.9 192,365 + -0.2 192,372 - Atu3182 0.11 -0.2 192,466 + Atu3182 0.32 +0.5 192,466 + Atu3182 0.32 +0.7 192,500 + Atu3182 0.40 -0.3 192,541 + Atu3182 0.49 +0.4 192,743 + +0.3 193,005 + Atu3183 0.54 +0.0 193,124 + -0.2 193,124 + -0.6 193,163 + -0.7 193,215 - -0.2 193,220 - +0.2
Or see this region's nucleotide sequence