Experiment: Methyl beta-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0678 and Atu0679 overlap by 4 nucleotides Atu0679 and Atu0680 are separated by 64 nucleotides Atu0680 and Atu0681 are separated by 110 nucleotides Atu0681 and Atu8056 are separated by 208 nucleotides
Atu0678: Atu0678 - histidyl-tRNA synthetase, at 672,807 to 673,934
Atu0678
Atu0679: Atu0679 - ATP phosphoribosyltransferase, at 673,931 to 674,623
Atu0679
Atu0680: Atu0680 - hypothetical protein, at 674,688 to 675,179
Atu0680
Atu0681: Atu0681 - hypothetical protein, at 675,290 to 675,724
Atu0681
Atu8056: Atu8056 - hypothetical protein, at 675,933 to 676,265
Atu8056
Position (kb) 674
675
676 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 673.697 kb on - strand, within Atu0678 at 673.802 kb on - strand, within Atu0678 at 673.901 kb on + strand at 673.929 kb on + strand at 673.993 kb on - strand at 674.162 kb on + strand, within Atu0679 at 674.162 kb on + strand, within Atu0679 at 674.170 kb on - strand, within Atu0679 at 674.255 kb on + strand, within Atu0679 at 674.286 kb on - strand, within Atu0679 at 674.387 kb on - strand, within Atu0679 at 674.407 kb on - strand, within Atu0679 at 674.428 kb on + strand, within Atu0679 at 674.473 kb on - strand, within Atu0679 at 674.686 kb on + strand at 674.759 kb on + strand, within Atu0680 at 674.767 kb on - strand, within Atu0680 at 674.767 kb on - strand, within Atu0680 at 674.831 kb on - strand, within Atu0680 at 674.852 kb on + strand, within Atu0680 at 674.970 kb on - strand, within Atu0680 at 674.975 kb on - strand, within Atu0680 at 675.182 kb on - strand at 675.185 kb on + strand at 675.456 kb on + strand, within Atu0681 at 675.464 kb on - strand, within Atu0681 at 675.493 kb on + strand, within Atu0681 at 675.502 kb on + strand, within Atu0681 at 675.522 kb on - strand, within Atu0681 at 675.527 kb on - strand, within Atu0681 at 675.649 kb on + strand, within Atu0681 at 675.659 kb on + strand, within Atu0681 at 675.720 kb on + strand at 675.730 kb on - strand at 675.735 kb on - strand at 675.817 kb on - strand at 676.123 kb on + strand, within Atu8056
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl beta-D-glucopyranoside (C) remove 673,697 - Atu0678 0.79 -4.0 673,802 - Atu0678 0.88 -1.8 673,901 + -2.1 673,929 + -0.5 673,993 - -2.0 674,162 + Atu0679 0.33 -4.3 674,162 + Atu0679 0.33 -4.8 674,170 - Atu0679 0.34 -2.4 674,255 + Atu0679 0.47 -3.4 674,286 - Atu0679 0.51 -5.6 674,387 - Atu0679 0.66 -2.1 674,407 - Atu0679 0.69 -3.8 674,428 + Atu0679 0.72 -4.8 674,473 - Atu0679 0.78 -2.8 674,686 + +0.1 674,759 + Atu0680 0.14 -0.3 674,767 - Atu0680 0.16 +1.2 674,767 - Atu0680 0.16 +0.4 674,831 - Atu0680 0.29 +0.2 674,852 + Atu0680 0.33 -0.3 674,970 - Atu0680 0.57 +1.3 674,975 - Atu0680 0.58 +0.1 675,182 - -0.2 675,185 + +0.1 675,456 + Atu0681 0.38 -0.1 675,464 - Atu0681 0.40 +1.0 675,493 + Atu0681 0.47 +0.2 675,502 + Atu0681 0.49 +0.2 675,522 - Atu0681 0.53 +0.1 675,527 - Atu0681 0.54 +0.2 675,649 + Atu0681 0.83 -0.5 675,659 + Atu0681 0.85 -0.1 675,720 + +0.2 675,730 - +0.7 675,735 - +0.2 675,817 - +1.4 676,123 + Atu8056 0.57 -0.3
Or see this region's nucleotide sequence