Experiment: Methyl alpha-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu6136 and Atu6137 are separated by 13 nucleotides Atu6137 and Atu6138 are separated by 231 nucleotides
Atu6136: Atu6136 - Na+/phosphate symporter, at 155,270 to 156,922
Atu6136
Atu6137: Atu6137 - hypothetical protein, at 156,936 to 157,232
Atu6137
Atu6138: Atu6138 - Repressor of the acc and arc operons, at 157,464 to 158,240
Atu6138
Position (kb) 156
157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 155.948 kb on - strand, within Atu6136 at 155.978 kb on + strand, within Atu6136 at 155.986 kb on - strand, within Atu6136 at 155.989 kb on + strand, within Atu6136 at 155.989 kb on + strand, within Atu6136 at 155.989 kb on + strand, within Atu6136 at 156.000 kb on + strand, within Atu6136 at 156.008 kb on - strand, within Atu6136 at 156.012 kb on + strand, within Atu6136 at 156.012 kb on + strand, within Atu6136 at 156.018 kb on - strand, within Atu6136 at 156.018 kb on - strand, within Atu6136 at 156.020 kb on - strand, within Atu6136 at 156.030 kb on - strand, within Atu6136 at 156.030 kb on - strand, within Atu6136 at 156.055 kb on - strand, within Atu6136 at 156.055 kb on - strand, within Atu6136 at 156.158 kb on + strand, within Atu6136 at 156.158 kb on + strand, within Atu6136 at 156.198 kb on + strand, within Atu6136 at 156.202 kb on - strand, within Atu6136 at 156.206 kb on - strand, within Atu6136 at 156.320 kb on + strand, within Atu6136 at 156.352 kb on + strand, within Atu6136 at 156.361 kb on - strand, within Atu6136 at 156.481 kb on + strand, within Atu6136 at 156.481 kb on + strand, within Atu6136 at 156.489 kb on - strand, within Atu6136 at 156.489 kb on - strand, within Atu6136 at 156.491 kb on - strand, within Atu6136 at 156.512 kb on + strand, within Atu6136 at 156.535 kb on + strand, within Atu6136 at 156.535 kb on + strand, within Atu6136 at 156.543 kb on - strand, within Atu6136 at 156.578 kb on + strand, within Atu6136 at 156.578 kb on + strand, within Atu6136 at 156.586 kb on - strand, within Atu6136 at 156.591 kb on - strand, within Atu6136 at 156.592 kb on - strand, within Atu6136 at 156.597 kb on - strand, within Atu6136 at 156.603 kb on - strand, within Atu6136 at 156.688 kb on + strand, within Atu6136 at 156.691 kb on - strand, within Atu6136 at 156.705 kb on - strand, within Atu6136 at 156.727 kb on + strand, within Atu6136 at 156.761 kb on + strand at 156.800 kb on + strand at 156.840 kb on + strand at 156.846 kb on + strand at 156.875 kb on - strand at 156.949 kb on + strand at 156.955 kb on + strand at 156.993 kb on + strand, within Atu6137 at 156.997 kb on + strand, within Atu6137 at 157.005 kb on - strand, within Atu6137 at 157.007 kb on + strand, within Atu6137 at 157.007 kb on + strand, within Atu6137 at 157.015 kb on - strand, within Atu6137 at 157.041 kb on + strand, within Atu6137 at 157.041 kb on + strand, within Atu6137 at 157.047 kb on + strand, within Atu6137 at 157.093 kb on + strand, within Atu6137 at 157.093 kb on + strand, within Atu6137 at 157.096 kb on - strand, within Atu6137 at 157.098 kb on + strand, within Atu6137 at 157.176 kb on + strand, within Atu6137 at 157.181 kb on + strand, within Atu6137 at 157.181 kb on + strand, within Atu6137 at 157.181 kb on + strand, within Atu6137 at 157.189 kb on - strand, within Atu6137 at 157.197 kb on + strand, within Atu6137 at 157.475 kb on - strand at 157.482 kb on - strand at 157.487 kb on - strand at 157.614 kb on + strand, within Atu6138 at 157.655 kb on + strand, within Atu6138 at 157.655 kb on + strand, within Atu6138 at 157.669 kb on + strand, within Atu6138 at 157.672 kb on - strand, within Atu6138 at 157.672 kb on - strand, within Atu6138 at 157.826 kb on - strand, within Atu6138 at 157.839 kb on + strand, within Atu6138 at 157.848 kb on - strand, within Atu6138 at 157.897 kb on + strand, within Atu6138 at 157.909 kb on - strand, within Atu6138 at 157.917 kb on + strand, within Atu6138 at 157.944 kb on - strand, within Atu6138 at 157.977 kb on + strand, within Atu6138 at 158.021 kb on - strand, within Atu6138 at 158.049 kb on + strand, within Atu6138 at 158.070 kb on + strand, within Atu6138
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl alpha-D-glucopyranoside (C) remove 155,948 - Atu6136 0.41 +1.0 155,978 + Atu6136 0.43 +0.0 155,986 - Atu6136 0.43 -0.6 155,989 + Atu6136 0.43 -0.0 155,989 + Atu6136 0.43 -0.2 155,989 + Atu6136 0.43 +0.4 156,000 + Atu6136 0.44 -0.6 156,008 - Atu6136 0.45 +0.3 156,012 + Atu6136 0.45 +0.9 156,012 + Atu6136 0.45 +0.0 156,018 - Atu6136 0.45 +1.1 156,018 - Atu6136 0.45 -0.1 156,020 - Atu6136 0.45 -0.1 156,030 - Atu6136 0.46 +0.2 156,030 - Atu6136 0.46 +0.1 156,055 - Atu6136 0.47 +0.4 156,055 - Atu6136 0.47 -0.4 156,158 + Atu6136 0.54 +0.0 156,158 + Atu6136 0.54 +0.3 156,198 + Atu6136 0.56 -0.7 156,202 - Atu6136 0.56 +1.0 156,206 - Atu6136 0.57 +0.7 156,320 + Atu6136 0.64 +1.1 156,352 + Atu6136 0.65 +0.7 156,361 - Atu6136 0.66 -0.2 156,481 + Atu6136 0.73 -0.4 156,481 + Atu6136 0.73 +0.0 156,489 - Atu6136 0.74 -0.3 156,489 - Atu6136 0.74 -0.9 156,491 - Atu6136 0.74 -0.0 156,512 + Atu6136 0.75 +0.2 156,535 + Atu6136 0.77 +0.2 156,535 + Atu6136 0.77 -1.7 156,543 - Atu6136 0.77 +0.3 156,578 + Atu6136 0.79 +1.3 156,578 + Atu6136 0.79 +0.7 156,586 - Atu6136 0.80 +0.6 156,591 - Atu6136 0.80 +1.4 156,592 - Atu6136 0.80 +2.9 156,597 - Atu6136 0.80 +0.0 156,603 - Atu6136 0.81 +1.7 156,688 + Atu6136 0.86 -0.8 156,691 - Atu6136 0.86 +0.0 156,705 - Atu6136 0.87 -0.2 156,727 + Atu6136 0.88 +0.7 156,761 + +3.0 156,800 + +0.4 156,840 + -0.3 156,846 + -0.3 156,875 - +1.2 156,949 + +0.1 156,955 + -0.3 156,993 + Atu6137 0.19 -3.4 156,997 + Atu6137 0.21 -2.5 157,005 - Atu6137 0.23 +0.5 157,007 + Atu6137 0.24 +1.0 157,007 + Atu6137 0.24 -0.1 157,015 - Atu6137 0.27 -0.1 157,041 + Atu6137 0.35 -0.6 157,041 + Atu6137 0.35 +0.5 157,047 + Atu6137 0.37 -0.1 157,093 + Atu6137 0.53 +0.8 157,093 + Atu6137 0.53 -1.5 157,096 - Atu6137 0.54 -0.3 157,098 + Atu6137 0.55 -1.0 157,176 + Atu6137 0.81 -0.2 157,181 + Atu6137 0.82 -0.3 157,181 + Atu6137 0.82 +1.1 157,181 + Atu6137 0.82 +0.2 157,189 - Atu6137 0.85 +12.3 157,197 + Atu6137 0.88 +0.3 157,475 - +0.2 157,482 - +0.9 157,487 - +1.6 157,614 + Atu6138 0.19 -0.4 157,655 + Atu6138 0.25 +1.5 157,655 + Atu6138 0.25 -0.0 157,669 + Atu6138 0.26 +0.0 157,672 - Atu6138 0.27 +1.3 157,672 - Atu6138 0.27 +0.7 157,826 - Atu6138 0.47 +0.3 157,839 + Atu6138 0.48 -0.3 157,848 - Atu6138 0.49 -1.1 157,897 + Atu6138 0.56 +0.3 157,909 - Atu6138 0.57 +2.0 157,917 + Atu6138 0.58 +0.0 157,944 - Atu6138 0.62 +0.1 157,977 + Atu6138 0.66 -0.9 158,021 - Atu6138 0.72 -1.8 158,049 + Atu6138 0.75 +0.5 158,070 + Atu6138 0.78 -0.1
Or see this region's nucleotide sequence