Strain Fitness in Agrobacterium fabrum C58 around Atu5084

Experiment: Methyl alpha-D-glucopyranoside (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5083 and Atu5084 are separated by 13 nucleotidesAtu5084 and Atu5085 are separated by 93 nucleotides Atu5083: Atu5083 - ABC transporter nucleotide binding/ATPase (sugar), at 84,749 to 85,864 Atu5083 Atu5084: Atu5084 - LysR family transcriptional regulator, at 85,878 to 86,831 Atu5084 Atu5085: Atu5085 - metallo-beta-lactamase, at 86,925 to 87,884 Atu5085 Position (kb) 85 86 87Strain fitness (log2 ratio) -2 -1 0 1 2 3at 84.908 kb on - strand, within Atu5083at 84.913 kb on - strand, within Atu5083at 84.913 kb on - strand, within Atu5083at 84.957 kb on - strand, within Atu5083at 85.033 kb on - strand, within Atu5083at 85.038 kb on - strand, within Atu5083at 85.083 kb on - strand, within Atu5083at 85.095 kb on - strand, within Atu5083at 85.096 kb on - strand, within Atu5083at 85.129 kb on - strand, within Atu5083at 85.160 kb on - strand, within Atu5083at 85.170 kb on - strand, within Atu5083at 85.255 kb on - strand, within Atu5083at 85.303 kb on + strand, within Atu5083at 85.309 kb on + strand, within Atu5083at 85.309 kb on + strand, within Atu5083at 85.317 kb on - strand, within Atu5083at 85.317 kb on - strand, within Atu5083at 85.330 kb on + strand, within Atu5083at 85.366 kb on + strand, within Atu5083at 85.408 kb on + strand, within Atu5083at 85.416 kb on - strand, within Atu5083at 85.416 kb on - strand, within Atu5083at 85.416 kb on - strand, within Atu5083at 85.430 kb on - strand, within Atu5083at 85.455 kb on + strand, within Atu5083at 85.501 kb on + strand, within Atu5083at 85.592 kb on + strand, within Atu5083at 85.600 kb on - strand, within Atu5083at 85.669 kb on - strand, within Atu5083at 85.708 kb on + strand, within Atu5083at 85.716 kb on - strand, within Atu5083at 85.716 kb on - strand, within Atu5083at 85.727 kb on - strand, within Atu5083at 85.940 kb on - strandat 85.956 kb on + strandat 85.964 kb on - strandat 86.021 kb on + strand, within Atu5084at 86.029 kb on - strand, within Atu5084at 86.029 kb on - strand, within Atu5084at 86.029 kb on - strand, within Atu5084at 86.041 kb on - strand, within Atu5084at 86.053 kb on + strand, within Atu5084at 86.083 kb on + strand, within Atu5084at 86.112 kb on + strand, within Atu5084at 86.201 kb on + strand, within Atu5084at 86.209 kb on - strand, within Atu5084at 86.236 kb on + strand, within Atu5084at 86.269 kb on + strand, within Atu5084at 86.295 kb on + strand, within Atu5084at 86.295 kb on + strand, within Atu5084at 86.403 kb on - strand, within Atu5084at 86.403 kb on - strand, within Atu5084at 86.475 kb on + strand, within Atu5084at 86.489 kb on + strand, within Atu5084at 86.540 kb on + strand, within Atu5084at 86.548 kb on - strand, within Atu5084at 86.548 kb on - strand, within Atu5084at 86.603 kb on - strand, within Atu5084at 86.608 kb on - strand, within Atu5084at 86.650 kb on + strand, within Atu5084at 86.658 kb on - strand, within Atu5084at 86.658 kb on - strand, within Atu5084at 86.665 kb on + strand, within Atu5084at 86.673 kb on - strand, within Atu5084at 86.689 kb on + strand, within Atu5084at 86.776 kb on - strandat 86.827 kb on + strandat 86.877 kb on + strandat 86.895 kb on + strandat 86.911 kb on - strandat 86.923 kb on - strandat 86.923 kb on - strandat 87.002 kb on - strandat 87.024 kb on - strand, within Atu5085at 87.025 kb on - strand, within Atu5085at 87.061 kb on + strand, within Atu5085at 87.064 kb on + strand, within Atu5085at 87.069 kb on - strand, within Atu5085at 87.071 kb on + strand, within Atu5085at 87.072 kb on - strand, within Atu5085at 87.078 kb on + strand, within Atu5085at 87.078 kb on + strand, within Atu5085at 87.079 kb on - strand, within Atu5085at 87.079 kb on - strand, within Atu5085at 87.080 kb on - strand, within Atu5085at 87.081 kb on - strand, within Atu5085at 87.099 kb on - strand, within Atu5085at 87.099 kb on - strand, within Atu5085at 87.109 kb on + strand, within Atu5085at 87.173 kb on + strand, within Atu5085at 87.173 kb on + strand, within Atu5085at 87.236 kb on + strand, within Atu5085at 87.307 kb on + strand, within Atu5085at 87.343 kb on + strand, within Atu5085at 87.351 kb on - strand, within Atu5085at 87.382 kb on + strand, within Atu5085at 87.498 kb on - strand, within Atu5085at 87.499 kb on + strand, within Atu5085at 87.499 kb on + strand, within Atu5085at 87.499 kb on + strand, within Atu5085at 87.591 kb on - strand, within Atu5085at 87.651 kb on + strand, within Atu5085at 87.717 kb on + strand, within Atu5085at 87.750 kb on + strand, within Atu5085at 87.762 kb on + strand, within Atu5085at 87.787 kb on + strand, within Atu5085

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Per-strain Table

Position Strand Gene LocusTag Fraction Methyl alpha-D-glucopyranoside (C)
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84,908 - Atu5083 0.14 +0.5
84,913 - Atu5083 0.15 +2.2
84,913 - Atu5083 0.15 +0.9
84,957 - Atu5083 0.19 -0.1
85,033 - Atu5083 0.25 +0.4
85,038 - Atu5083 0.26 +1.2
85,083 - Atu5083 0.30 -1.0
85,095 - Atu5083 0.31 -1.1
85,096 - Atu5083 0.31 +0.1
85,129 - Atu5083 0.34 +0.2
85,160 - Atu5083 0.37 +1.4
85,170 - Atu5083 0.38 -1.2
85,255 - Atu5083 0.45 -1.2
85,303 + Atu5083 0.50 +0.9
85,309 + Atu5083 0.50 +0.9
85,309 + Atu5083 0.50 -0.9
85,317 - Atu5083 0.51 +1.8
85,317 - Atu5083 0.51 -0.4
85,330 + Atu5083 0.52 +0.2
85,366 + Atu5083 0.55 -0.2
85,408 + Atu5083 0.59 +0.0
85,416 - Atu5083 0.60 +0.3
85,416 - Atu5083 0.60 +1.1
85,416 - Atu5083 0.60 -0.1
85,430 - Atu5083 0.61 -1.5
85,455 + Atu5083 0.63 -0.4
85,501 + Atu5083 0.67 -0.5
85,592 + Atu5083 0.76 +0.2
85,600 - Atu5083 0.76 +0.0
85,669 - Atu5083 0.82 -1.2
85,708 + Atu5083 0.86 +0.4
85,716 - Atu5083 0.87 -0.3
85,716 - Atu5083 0.87 +0.0
85,727 - Atu5083 0.88 +1.4
85,940 - +0.1
85,956 + +0.3
85,964 - +0.1
86,021 + Atu5084 0.15 +1.0
86,029 - Atu5084 0.16 +0.1
86,029 - Atu5084 0.16 +2.6
86,029 - Atu5084 0.16 -0.1
86,041 - Atu5084 0.17 +1.1
86,053 + Atu5084 0.18 +0.0
86,083 + Atu5084 0.21 +3.2
86,112 + Atu5084 0.25 +1.5
86,201 + Atu5084 0.34 -0.6
86,209 - Atu5084 0.35 -0.1
86,236 + Atu5084 0.38 -0.4
86,269 + Atu5084 0.41 -0.2
86,295 + Atu5084 0.44 +0.6
86,295 + Atu5084 0.44 +2.3
86,403 - Atu5084 0.55 +0.4
86,403 - Atu5084 0.55 -0.3
86,475 + Atu5084 0.63 +0.6
86,489 + Atu5084 0.64 -0.3
86,540 + Atu5084 0.69 +1.4
86,548 - Atu5084 0.70 +0.4
86,548 - Atu5084 0.70 +1.4
86,603 - Atu5084 0.76 +0.9
86,608 - Atu5084 0.77 +1.6
86,650 + Atu5084 0.81 +1.1
86,658 - Atu5084 0.82 +0.2
86,658 - Atu5084 0.82 +2.6
86,665 + Atu5084 0.82 -0.0
86,673 - Atu5084 0.83 +0.4
86,689 + Atu5084 0.85 -0.6
86,776 - +0.8
86,827 + +0.2
86,877 + +0.3
86,895 + +0.6
86,911 - +2.2
86,923 - -1.0
86,923 - +0.0
87,002 - +0.3
87,024 - Atu5085 0.10 +3.2
87,025 - Atu5085 0.10 +0.7
87,061 + Atu5085 0.14 +1.0
87,064 + Atu5085 0.14 +0.9
87,069 - Atu5085 0.15 +0.4
87,071 + Atu5085 0.15 -0.4
87,072 - Atu5085 0.15 +0.5
87,078 + Atu5085 0.16 +1.6
87,078 + Atu5085 0.16 +1.4
87,079 - Atu5085 0.16 +0.2
87,079 - Atu5085 0.16 +0.6
87,080 - Atu5085 0.16 -0.5
87,081 - Atu5085 0.16 -0.4
87,099 - Atu5085 0.18 -0.3
87,099 - Atu5085 0.18 -0.7
87,109 + Atu5085 0.19 -0.6
87,173 + Atu5085 0.26 -0.6
87,173 + Atu5085 0.26 +0.2
87,236 + Atu5085 0.32 -0.8
87,307 + Atu5085 0.40 +0.7
87,343 + Atu5085 0.44 -0.1
87,351 - Atu5085 0.44 +0.6
87,382 + Atu5085 0.48 +0.3
87,498 - Atu5085 0.60 -0.9
87,499 + Atu5085 0.60 -0.2
87,499 + Atu5085 0.60 +1.1
87,499 + Atu5085 0.60 -1.0
87,591 - Atu5085 0.69 -2.4
87,651 + Atu5085 0.76 -0.1
87,717 + Atu5085 0.82 +0.4
87,750 + Atu5085 0.86 -0.3
87,762 + Atu5085 0.87 -0.9
87,787 + Atu5085 0.90 +0.1

Or see this region's nucleotide sequence