Experiment: Methyl alpha-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3414 and Atu3415 are separated by 90 nucleotides Atu3415 and Atu3416 are separated by 139 nucleotides
Atu3414: Atu3414 - AgaE protein, at 460,840 to 462,165
Atu3414
Atu3415: Atu3415 - ABC transporter substrate binding protein, at 462,256 to 463,191
Atu3415
Atu3416: Atu3416 - ABC transporter substrate binding protein, at 463,331 to 464,269
Atu3416
Position (kb) 462
463
464 Strain fitness (log2 ratio) -2
-1
0
1
2 at 461.322 kb on + strand, within Atu3414 at 461.322 kb on + strand, within Atu3414 at 461.330 kb on - strand, within Atu3414 at 461.330 kb on - strand, within Atu3414 at 461.352 kb on - strand, within Atu3414 at 461.362 kb on - strand, within Atu3414 at 461.385 kb on - strand, within Atu3414 at 461.421 kb on + strand, within Atu3414 at 461.465 kb on + strand, within Atu3414 at 461.893 kb on + strand, within Atu3414 at 461.999 kb on + strand, within Atu3414 at 462.011 kb on - strand, within Atu3414 at 462.138 kb on + strand at 462.360 kb on + strand, within Atu3415 at 462.376 kb on + strand, within Atu3415 at 462.393 kb on + strand, within Atu3415 at 462.401 kb on + strand, within Atu3415 at 462.401 kb on - strand, within Atu3415 at 462.401 kb on - strand, within Atu3415 at 462.455 kb on + strand, within Atu3415 at 462.552 kb on - strand, within Atu3415 at 462.570 kb on - strand, within Atu3415 at 462.673 kb on + strand, within Atu3415 at 462.681 kb on - strand, within Atu3415 at 462.865 kb on - strand, within Atu3415 at 462.896 kb on - strand, within Atu3415 at 463.217 kb on + strand at 463.269 kb on - strand at 463.271 kb on + strand at 463.308 kb on + strand at 463.372 kb on - strand at 463.372 kb on - strand at 463.378 kb on + strand at 463.378 kb on - strand at 463.438 kb on - strand, within Atu3416 at 463.444 kb on + strand, within Atu3416 at 463.465 kb on - strand, within Atu3416 at 463.553 kb on - strand, within Atu3416 at 463.691 kb on - strand, within Atu3416 at 463.725 kb on - strand, within Atu3416 at 463.783 kb on + strand, within Atu3416 at 463.796 kb on + strand, within Atu3416 at 463.894 kb on - strand, within Atu3416 at 463.940 kb on + strand, within Atu3416 at 463.949 kb on - strand, within Atu3416 at 464.078 kb on - strand, within Atu3416 at 464.181 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl alpha-D-glucopyranoside (C) remove 461,322 + Atu3414 0.36 -0.2 461,322 + Atu3414 0.36 -1.2 461,330 - Atu3414 0.37 -0.1 461,330 - Atu3414 0.37 +2.7 461,352 - Atu3414 0.39 +0.0 461,362 - Atu3414 0.39 -0.1 461,385 - Atu3414 0.41 +0.2 461,421 + Atu3414 0.44 -0.0 461,465 + Atu3414 0.47 -0.6 461,893 + Atu3414 0.79 +1.2 461,999 + Atu3414 0.87 -1.0 462,011 - Atu3414 0.88 +0.4 462,138 + -1.6 462,360 + Atu3415 0.11 +0.8 462,376 + Atu3415 0.13 +0.3 462,393 + Atu3415 0.15 +0.5 462,401 + Atu3415 0.15 +0.2 462,401 - Atu3415 0.15 +0.8 462,401 - Atu3415 0.15 +0.8 462,455 + Atu3415 0.21 -2.0 462,552 - Atu3415 0.32 +0.6 462,570 - Atu3415 0.34 +1.0 462,673 + Atu3415 0.45 +0.4 462,681 - Atu3415 0.45 -0.4 462,865 - Atu3415 0.65 -0.9 462,896 - Atu3415 0.68 +0.3 463,217 + -0.2 463,269 - +0.8 463,271 + -0.5 463,308 + -0.1 463,372 - -0.9 463,372 - -0.4 463,378 + +0.2 463,378 - +0.1 463,438 - Atu3416 0.11 +0.8 463,444 + Atu3416 0.12 +0.3 463,465 - Atu3416 0.14 +0.8 463,553 - Atu3416 0.24 -0.6 463,691 - Atu3416 0.38 -0.1 463,725 - Atu3416 0.42 +0.4 463,783 + Atu3416 0.48 -0.1 463,796 + Atu3416 0.50 -0.9 463,894 - Atu3416 0.60 +0.0 463,940 + Atu3416 0.65 -0.7 463,949 - Atu3416 0.66 -0.4 464,078 - Atu3416 0.80 -0.2 464,181 - +0.1
Or see this region's nucleotide sequence