Experiment: Methyl alpha-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0270 and Atu0271 are separated by 50 nucleotides Atu0271 and Atu0272 are separated by 110 nucleotides Atu0272 and Atu0273 are separated by 96 nucleotides
Atu0270: Atu0270 - mandelate racemase / muconate lactonizing enzyme family protein, at 266,640 to 267,842
Atu0270
Atu0271: Atu0271 - transcriptional regulator, GntR family, at 267,893 to 268,600
Atu0271
Atu0272: Atu0272 - transcriptional regulator, MarR family, at 268,711 to 269,196
Atu0272
Atu0273: Atu0273 - regulator protein pecM, at 269,293 to 270,156
Atu0273
Position (kb) 267
268
269 Strain fitness (log2 ratio) -1
0
1
2 at 266.907 kb on - strand, within Atu0270 at 267.070 kb on + strand, within Atu0270 at 267.095 kb on + strand, within Atu0270 at 267.138 kb on - strand, within Atu0270 at 267.159 kb on + strand, within Atu0270 at 267.187 kb on + strand, within Atu0270 at 267.189 kb on + strand, within Atu0270 at 267.195 kb on - strand, within Atu0270 at 267.324 kb on + strand, within Atu0270 at 267.329 kb on + strand, within Atu0270 at 267.335 kb on - strand, within Atu0270 at 267.371 kb on + strand, within Atu0270 at 267.371 kb on + strand, within Atu0270 at 267.379 kb on - strand, within Atu0270 at 267.403 kb on + strand, within Atu0270 at 267.403 kb on + strand, within Atu0270 at 267.425 kb on + strand, within Atu0270 at 267.484 kb on - strand, within Atu0270 at 267.485 kb on + strand, within Atu0270 at 267.491 kb on - strand, within Atu0270 at 267.642 kb on + strand, within Atu0270 at 267.722 kb on - strand at 267.762 kb on + strand at 267.765 kb on - strand at 267.765 kb on - strand at 267.767 kb on + strand at 267.770 kb on - strand at 267.784 kb on + strand at 267.785 kb on - strand at 267.820 kb on + strand at 267.955 kb on + strand at 268.009 kb on - strand, within Atu0271 at 268.067 kb on + strand, within Atu0271 at 268.067 kb on + strand, within Atu0271 at 268.075 kb on - strand, within Atu0271 at 268.158 kb on - strand, within Atu0271 at 268.159 kb on - strand, within Atu0271 at 268.173 kb on - strand, within Atu0271 at 268.276 kb on + strand, within Atu0271 at 268.284 kb on - strand, within Atu0271 at 268.334 kb on - strand, within Atu0271 at 268.355 kb on + strand, within Atu0271 at 268.357 kb on + strand, within Atu0271 at 268.528 kb on + strand, within Atu0271 at 268.668 kb on + strand at 268.668 kb on + strand at 268.757 kb on - strand at 268.817 kb on + strand, within Atu0272 at 268.952 kb on + strand, within Atu0272 at 269.065 kb on - strand, within Atu0272 at 269.091 kb on + strand, within Atu0272 at 269.099 kb on - strand, within Atu0272 at 269.325 kb on + strand at 269.480 kb on + strand, within Atu0273
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl alpha-D-glucopyranoside (C) remove 266,907 - Atu0270 0.22 -0.3 267,070 + Atu0270 0.36 +0.0 267,095 + Atu0270 0.38 +1.8 267,138 - Atu0270 0.41 -0.2 267,159 + Atu0270 0.43 +1.0 267,187 + Atu0270 0.45 +0.8 267,189 + Atu0270 0.46 +0.6 267,195 - Atu0270 0.46 -0.5 267,324 + Atu0270 0.57 -0.0 267,329 + Atu0270 0.57 +0.3 267,335 - Atu0270 0.58 +0.8 267,371 + Atu0270 0.61 -0.0 267,371 + Atu0270 0.61 -0.5 267,379 - Atu0270 0.61 +0.1 267,403 + Atu0270 0.63 -0.5 267,403 + Atu0270 0.63 -0.2 267,425 + Atu0270 0.65 -0.5 267,484 - Atu0270 0.70 +0.2 267,485 + Atu0270 0.70 +0.1 267,491 - Atu0270 0.71 +0.3 267,642 + Atu0270 0.83 -0.3 267,722 - +0.6 267,762 + -0.0 267,765 - +0.1 267,765 - +0.1 267,767 + -0.7 267,770 - +0.1 267,784 + +0.2 267,785 - -1.2 267,820 + +1.1 267,955 + +1.2 268,009 - Atu0271 0.16 +0.6 268,067 + Atu0271 0.25 +0.9 268,067 + Atu0271 0.25 +0.1 268,075 - Atu0271 0.26 +1.2 268,158 - Atu0271 0.37 +0.5 268,159 - Atu0271 0.38 +0.4 268,173 - Atu0271 0.40 +1.4 268,276 + Atu0271 0.54 -1.0 268,284 - Atu0271 0.55 +1.0 268,334 - Atu0271 0.62 +1.2 268,355 + Atu0271 0.65 -0.1 268,357 + Atu0271 0.66 +0.1 268,528 + Atu0271 0.90 +0.0 268,668 + +0.9 268,668 + +0.1 268,757 - -0.3 268,817 + Atu0272 0.22 +1.3 268,952 + Atu0272 0.50 -1.0 269,065 - Atu0272 0.73 -0.5 269,091 + Atu0272 0.78 -0.1 269,099 - Atu0272 0.80 +0.2 269,325 + -0.4 269,480 + Atu0273 0.22 -0.1
Or see this region's nucleotide sequence