Experiment: Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3277 and Atu3278 overlap by 1 nucleotides Atu3278 and Atu3279 overlap by 1 nucleotides Atu3279 and Atu3280 are separated by 101 nucleotides
Atu3277: Atu3277 - nitrilotriacetate monooxygenase, at 302,505 to 303,029
Atu3277
Atu3278: Atu3278 - aryl-alcohol dehydrogenase, at 303,029 to 303,922
Atu3278
Atu3279: Atu3279 - methanesulfonate sulfonatase, at 303,922 to 305,079
Atu3279
Atu3280: Atu3280 - GntR family transcriptional regulator, at 305,181 to 305,885
Atu3280
Position (kb) 303
304
305
306 Strain fitness (log2 ratio) -2
-1
0
1
2 at 302.926 kb on - strand, within Atu3277 at 302.935 kb on + strand, within Atu3277 at 303.064 kb on + strand at 303.064 kb on - strand at 303.064 kb on - strand at 303.081 kb on - strand at 303.122 kb on - strand, within Atu3278 at 303.183 kb on - strand, within Atu3278 at 303.214 kb on + strand, within Atu3278 at 303.261 kb on + strand, within Atu3278 at 303.261 kb on + strand, within Atu3278 at 303.296 kb on + strand, within Atu3278 at 303.304 kb on - strand, within Atu3278 at 303.401 kb on + strand, within Atu3278 at 303.443 kb on - strand, within Atu3278 at 303.459 kb on + strand, within Atu3278 at 303.459 kb on + strand, within Atu3278 at 303.459 kb on + strand, within Atu3278 at 303.467 kb on - strand, within Atu3278 at 303.467 kb on - strand, within Atu3278 at 303.467 kb on - strand, within Atu3278 at 303.508 kb on + strand, within Atu3278 at 303.602 kb on + strand, within Atu3278 at 303.605 kb on - strand, within Atu3278 at 303.629 kb on - strand, within Atu3278 at 303.642 kb on + strand, within Atu3278 at 303.655 kb on - strand, within Atu3278 at 303.718 kb on + strand, within Atu3278 at 303.740 kb on + strand, within Atu3278 at 303.749 kb on + strand, within Atu3278 at 303.775 kb on + strand, within Atu3278 at 303.775 kb on + strand, within Atu3278 at 303.783 kb on - strand, within Atu3278 at 303.794 kb on - strand, within Atu3278 at 303.807 kb on + strand, within Atu3278 at 303.877 kb on + strand at 304.125 kb on - strand, within Atu3279 at 304.148 kb on - strand, within Atu3279 at 304.312 kb on - strand, within Atu3279 at 304.380 kb on - strand, within Atu3279 at 304.385 kb on - strand, within Atu3279 at 304.591 kb on - strand, within Atu3279 at 304.591 kb on - strand, within Atu3279 at 304.619 kb on - strand, within Atu3279 at 304.656 kb on + strand, within Atu3279 at 304.685 kb on - strand, within Atu3279 at 304.842 kb on + strand, within Atu3279 at 304.850 kb on - strand, within Atu3279 at 304.903 kb on - strand, within Atu3279 at 304.949 kb on - strand, within Atu3279 at 305.052 kb on - strand at 305.065 kb on - strand at 305.089 kb on + strand at 305.304 kb on + strand, within Atu3280 at 305.304 kb on + strand, within Atu3280 at 305.438 kb on - strand, within Atu3280 at 305.440 kb on + strand, within Atu3280 at 305.448 kb on - strand, within Atu3280 at 305.656 kb on + strand, within Atu3280 at 305.770 kb on + strand, within Atu3280 at 305.773 kb on + strand, within Atu3280 at 305.773 kb on + strand, within Atu3280 at 305.813 kb on - strand, within Atu3280 at 305.813 kb on - strand, within Atu3280 at 305.951 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 302,926 - Atu3277 0.80 +0.0 302,935 + Atu3277 0.82 -1.1 303,064 + -0.1 303,064 - +0.2 303,064 - -1.5 303,081 - +0.3 303,122 - Atu3278 0.10 -0.1 303,183 - Atu3278 0.17 +1.5 303,214 + Atu3278 0.21 -0.8 303,261 + Atu3278 0.26 -0.0 303,261 + Atu3278 0.26 -0.3 303,296 + Atu3278 0.30 +1.5 303,304 - Atu3278 0.31 +0.3 303,401 + Atu3278 0.42 +0.0 303,443 - Atu3278 0.46 +0.9 303,459 + Atu3278 0.48 -0.5 303,459 + Atu3278 0.48 -1.3 303,459 + Atu3278 0.48 +1.5 303,467 - Atu3278 0.49 -0.0 303,467 - Atu3278 0.49 +0.3 303,467 - Atu3278 0.49 -0.9 303,508 + Atu3278 0.54 -0.4 303,602 + Atu3278 0.64 -0.9 303,605 - Atu3278 0.64 -0.1 303,629 - Atu3278 0.67 +1.4 303,642 + Atu3278 0.69 +0.3 303,655 - Atu3278 0.70 -0.2 303,718 + Atu3278 0.77 -0.8 303,740 + Atu3278 0.80 +0.4 303,749 + Atu3278 0.81 +0.6 303,775 + Atu3278 0.83 -0.5 303,775 + Atu3278 0.83 -1.1 303,783 - Atu3278 0.84 -0.0 303,794 - Atu3278 0.86 +0.7 303,807 + Atu3278 0.87 -1.8 303,877 + -0.5 304,125 - Atu3279 0.18 +0.1 304,148 - Atu3279 0.20 -1.6 304,312 - Atu3279 0.34 -1.3 304,380 - Atu3279 0.40 -0.1 304,385 - Atu3279 0.40 -1.2 304,591 - Atu3279 0.58 -0.1 304,591 - Atu3279 0.58 -2.5 304,619 - Atu3279 0.60 -0.6 304,656 + Atu3279 0.63 -0.4 304,685 - Atu3279 0.66 +2.3 304,842 + Atu3279 0.79 -0.5 304,850 - Atu3279 0.80 -1.2 304,903 - Atu3279 0.85 -0.5 304,949 - Atu3279 0.89 -1.2 305,052 - -1.1 305,065 - +0.3 305,089 + +1.0 305,304 + Atu3280 0.17 +0.8 305,304 + Atu3280 0.17 -0.3 305,438 - Atu3280 0.36 +0.3 305,440 + Atu3280 0.37 +0.2 305,448 - Atu3280 0.38 +1.5 305,656 + Atu3280 0.67 +0.2 305,770 + Atu3280 0.84 +0.0 305,773 + Atu3280 0.84 -0.6 305,773 + Atu3280 0.84 +0.3 305,813 - Atu3280 0.90 -0.6 305,813 - Atu3280 0.90 -1.1 305,951 - -0.4
Or see this region's nucleotide sequence