Experiment: Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3725 and Atu3726 are separated by 146 nucleotides Atu3726 and Atu3727 are separated by 86 nucleotides
Atu3725: Atu3725 - methyl-accepting chemotaxis protein, at 804,862 to 807,171
Atu3725
Atu3726: Atu3726 - flavin dependent oxidoreductase, at 807,318 to 808,319
Atu3726
Atu3727: Atu3727 - hypothetical protein, at 808,406 to 809,152
Atu3727
Position (kb) 807
808
809 Strain fitness (log2 ratio) -2
-1
0
1
2 at 806.466 kb on - strand, within Atu3725 at 806.515 kb on - strand, within Atu3725 at 806.525 kb on - strand, within Atu3725 at 806.547 kb on - strand, within Atu3725 at 806.583 kb on - strand, within Atu3725 at 806.596 kb on - strand, within Atu3725 at 806.628 kb on - strand, within Atu3725 at 806.715 kb on - strand, within Atu3725 at 806.785 kb on + strand, within Atu3725 at 806.842 kb on + strand, within Atu3725 at 806.849 kb on - strand, within Atu3725 at 807.013 kb on - strand at 807.100 kb on - strand at 807.128 kb on - strand at 807.282 kb on - strand at 807.355 kb on + strand at 807.360 kb on + strand at 807.360 kb on + strand at 807.363 kb on - strand at 807.515 kb on - strand, within Atu3726 at 807.544 kb on + strand, within Atu3726 at 807.587 kb on + strand, within Atu3726 at 807.595 kb on - strand, within Atu3726 at 807.595 kb on - strand, within Atu3726 at 807.739 kb on + strand, within Atu3726 at 807.742 kb on - strand, within Atu3726 at 807.747 kb on - strand, within Atu3726 at 807.860 kb on + strand, within Atu3726 at 807.860 kb on + strand, within Atu3726 at 807.914 kb on + strand, within Atu3726 at 807.937 kb on - strand, within Atu3726 at 807.955 kb on + strand, within Atu3726 at 807.956 kb on + strand, within Atu3726 at 807.956 kb on + strand, within Atu3726 at 808.093 kb on + strand, within Atu3726 at 808.094 kb on - strand, within Atu3726 at 808.101 kb on - strand, within Atu3726 at 808.560 kb on + strand, within Atu3727 at 808.703 kb on - strand, within Atu3727 at 808.726 kb on - strand, within Atu3727 at 808.862 kb on - strand, within Atu3727 at 808.949 kb on + strand, within Atu3727 at 809.245 kb on + strand at 809.280 kb on + strand at 809.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 806,466 - Atu3725 0.69 +0.2 806,515 - Atu3725 0.72 -0.7 806,525 - Atu3725 0.72 -2.1 806,547 - Atu3725 0.73 -0.2 806,583 - Atu3725 0.75 -0.1 806,596 - Atu3725 0.75 -0.1 806,628 - Atu3725 0.76 -1.5 806,715 - Atu3725 0.80 -0.8 806,785 + Atu3725 0.83 -0.4 806,842 + Atu3725 0.86 -0.3 806,849 - Atu3725 0.86 -0.0 807,013 - -0.4 807,100 - +0.2 807,128 - -0.0 807,282 - +0.3 807,355 + -0.0 807,360 + +1.2 807,360 + +2.2 807,363 - +1.7 807,515 - Atu3726 0.20 +0.1 807,544 + Atu3726 0.23 +0.4 807,587 + Atu3726 0.27 +1.3 807,595 - Atu3726 0.28 -0.3 807,595 - Atu3726 0.28 +0.4 807,739 + Atu3726 0.42 +1.9 807,742 - Atu3726 0.42 -0.1 807,747 - Atu3726 0.43 -0.0 807,860 + Atu3726 0.54 +0.5 807,860 + Atu3726 0.54 +0.0 807,914 + Atu3726 0.59 +1.3 807,937 - Atu3726 0.62 -0.3 807,955 + Atu3726 0.64 +0.5 807,956 + Atu3726 0.64 +0.3 807,956 + Atu3726 0.64 +1.0 808,093 + Atu3726 0.77 +0.5 808,094 - Atu3726 0.77 +0.7 808,101 - Atu3726 0.78 +0.5 808,560 + Atu3727 0.21 -1.6 808,703 - Atu3727 0.40 -0.9 808,726 - Atu3727 0.43 -1.9 808,862 - Atu3727 0.61 -0.7 808,949 + Atu3727 0.73 +0.4 809,245 + -1.5 809,280 + -1.5 809,291 + -1.2
Or see this region's nucleotide sequence