Experiment: Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3387 and Atu3388 are separated by 211 nucleotides Atu3388 and Atu3389 overlap by 7 nucleotides Atu3389 and Atu3390 overlap by 4 nucleotides
Atu3387: Atu3387 - sigma factor, at 431,670 to 432,170
Atu3387
Atu3388: Atu3388 - iron ABC transporter ATPase, at 432,382 to 433,134
Atu3388
Atu3389: Atu3389 - iron ABC transporter permease, at 433,128 to 434,195
Atu3389
Atu3390: Atu3390 - ABC transporter substrate-binding protein, at 434,192 to 435,331
Atu3390
Position (kb) 433
434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 432.178 kb on - strand at 432.217 kb on - strand at 432.232 kb on + strand at 432.240 kb on - strand at 432.317 kb on + strand at 432.317 kb on + strand at 432.405 kb on + strand at 432.413 kb on - strand at 432.423 kb on - strand at 432.455 kb on + strand at 432.552 kb on + strand, within Atu3388 at 432.667 kb on - strand, within Atu3388 at 432.835 kb on + strand, within Atu3388 at 432.868 kb on + strand, within Atu3388 at 432.868 kb on + strand, within Atu3388 at 432.876 kb on - strand, within Atu3388 at 432.876 kb on - strand, within Atu3388 at 432.962 kb on - strand, within Atu3388 at 432.989 kb on + strand, within Atu3388 at 432.991 kb on + strand, within Atu3388 at 433.058 kb on - strand, within Atu3388 at 433.070 kb on + strand at 433.078 kb on - strand at 433.080 kb on + strand at 433.092 kb on + strand at 433.101 kb on - strand at 433.111 kb on - strand at 433.175 kb on - strand at 433.471 kb on + strand, within Atu3389 at 433.494 kb on + strand, within Atu3389 at 433.502 kb on - strand, within Atu3389 at 433.542 kb on + strand, within Atu3389 at 433.544 kb on + strand, within Atu3389 at 433.550 kb on - strand, within Atu3389 at 433.550 kb on - strand, within Atu3389 at 433.550 kb on - strand, within Atu3389 at 433.578 kb on + strand, within Atu3389 at 433.777 kb on + strand, within Atu3389 at 433.862 kb on + strand, within Atu3389 at 433.897 kb on + strand, within Atu3389 at 433.905 kb on - strand, within Atu3389 at 434.016 kb on + strand, within Atu3389 at 434.032 kb on + strand, within Atu3389 at 434.032 kb on + strand, within Atu3389 at 434.042 kb on + strand, within Atu3389 at 434.050 kb on - strand, within Atu3389 at 434.059 kb on - strand, within Atu3389 at 434.091 kb on - strand at 434.233 kb on + strand at 434.233 kb on + strand at 434.241 kb on - strand at 434.241 kb on - strand at 434.318 kb on - strand, within Atu3390 at 434.361 kb on + strand, within Atu3390 at 434.361 kb on + strand, within Atu3390 at 434.361 kb on + strand, within Atu3390 at 434.361 kb on + strand, within Atu3390 at 434.369 kb on - strand, within Atu3390 at 434.369 kb on - strand, within Atu3390 at 434.369 kb on - strand, within Atu3390 at 434.369 kb on - strand, within Atu3390 at 434.465 kb on + strand, within Atu3390 at 434.481 kb on + strand, within Atu3390 at 434.500 kb on + strand, within Atu3390 at 434.533 kb on - strand, within Atu3390 at 434.621 kb on + strand, within Atu3390 at 434.872 kb on - strand, within Atu3390 at 434.887 kb on + strand, within Atu3390 at 434.930 kb on - strand, within Atu3390 at 434.996 kb on + strand, within Atu3390 at 435.028 kb on + strand, within Atu3390 at 435.050 kb on - strand, within Atu3390 at 435.103 kb on - strand, within Atu3390 at 435.113 kb on - strand, within Atu3390 at 435.173 kb on + strand, within Atu3390 at 435.173 kb on + strand, within Atu3390 at 435.174 kb on + strand, within Atu3390
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 432,178 - +2.0 432,217 - -0.4 432,232 + +0.3 432,240 - +0.4 432,317 + +0.1 432,317 + -0.9 432,405 + +0.6 432,413 - -0.5 432,423 - -0.9 432,455 + -0.2 432,552 + Atu3388 0.23 -1.0 432,667 - Atu3388 0.38 -1.2 432,835 + Atu3388 0.60 -0.7 432,868 + Atu3388 0.65 -1.4 432,868 + Atu3388 0.65 +0.0 432,876 - Atu3388 0.66 +0.9 432,876 - Atu3388 0.66 -0.8 432,962 - Atu3388 0.77 -0.9 432,989 + Atu3388 0.81 -1.3 432,991 + Atu3388 0.81 +0.6 433,058 - Atu3388 0.90 -0.4 433,070 + -0.7 433,078 - -0.9 433,080 + +0.9 433,092 + -0.7 433,101 - -2.4 433,111 - -1.3 433,175 - -1.7 433,471 + Atu3389 0.32 -0.7 433,494 + Atu3389 0.34 -2.3 433,502 - Atu3389 0.35 -0.8 433,542 + Atu3389 0.39 -0.9 433,544 + Atu3389 0.39 -1.7 433,550 - Atu3389 0.40 -3.0 433,550 - Atu3389 0.40 -0.2 433,550 - Atu3389 0.40 -1.1 433,578 + Atu3389 0.42 -0.5 433,777 + Atu3389 0.61 +0.2 433,862 + Atu3389 0.69 -1.3 433,897 + Atu3389 0.72 -0.3 433,905 - Atu3389 0.73 -0.5 434,016 + Atu3389 0.83 -0.0 434,032 + Atu3389 0.85 -1.5 434,032 + Atu3389 0.85 -2.1 434,042 + Atu3389 0.86 -0.9 434,050 - Atu3389 0.86 -0.9 434,059 - Atu3389 0.87 -0.1 434,091 - +0.3 434,233 + +1.0 434,233 + -1.9 434,241 - -1.8 434,241 - +0.0 434,318 - Atu3390 0.11 +3.0 434,361 + Atu3390 0.15 -0.8 434,361 + Atu3390 0.15 -0.4 434,361 + Atu3390 0.15 -0.5 434,361 + Atu3390 0.15 -0.8 434,369 - Atu3390 0.16 -0.7 434,369 - Atu3390 0.16 +1.2 434,369 - Atu3390 0.16 -0.6 434,369 - Atu3390 0.16 -0.2 434,465 + Atu3390 0.24 -0.2 434,481 + Atu3390 0.25 +0.6 434,500 + Atu3390 0.27 +0.2 434,533 - Atu3390 0.30 -0.9 434,621 + Atu3390 0.38 -3.7 434,872 - Atu3390 0.60 -0.3 434,887 + Atu3390 0.61 -1.0 434,930 - Atu3390 0.65 -0.8 434,996 + Atu3390 0.71 -1.4 435,028 + Atu3390 0.73 -0.5 435,050 - Atu3390 0.75 -1.0 435,103 - Atu3390 0.80 -1.3 435,113 - Atu3390 0.81 -0.2 435,173 + Atu3390 0.86 -0.7 435,173 + Atu3390 0.86 -0.7 435,174 + Atu3390 0.86 -0.5
Or see this region's nucleotide sequence