Experiment: Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0167 and Atu0168 are separated by 87 nucleotides Atu0168 and Atu0169 are separated by 44 nucleotides
Atu0167: Atu0167 - transcriptional regulator, AraC family, at 171,256 to 172,296
Atu0167
Atu0168: Atu0168 - guanylate kinase, at 172,384 to 172,935
Atu0168
Atu0169: Atu0169 - hypothetical protein, at 172,980 to 174,116
Atu0169
Position (kb) 172
173 Strain fitness (log2 ratio) -2
-1
0
1
2 at 171.498 kb on + strand, within Atu0167 at 171.550 kb on + strand, within Atu0167 at 171.594 kb on - strand, within Atu0167 at 172.028 kb on - strand, within Atu0167 at 172.077 kb on - strand, within Atu0167 at 172.149 kb on + strand, within Atu0167 at 172.149 kb on + strand, within Atu0167 at 172.225 kb on + strand at 172.381 kb on + strand at 172.401 kb on - strand at 172.509 kb on + strand, within Atu0168 at 172.540 kb on + strand, within Atu0168 at 172.554 kb on + strand, within Atu0168 at 172.554 kb on + strand, within Atu0168 at 172.554 kb on + strand, within Atu0168 at 172.562 kb on - strand, within Atu0168 at 172.646 kb on - strand, within Atu0168 at 172.713 kb on + strand, within Atu0168 at 172.812 kb on + strand, within Atu0168 at 173.057 kb on - strand at 173.155 kb on + strand, within Atu0169 at 173.163 kb on - strand, within Atu0169 at 173.315 kb on - strand, within Atu0169 at 173.316 kb on + strand, within Atu0169 at 173.383 kb on - strand, within Atu0169 at 173.461 kb on - strand, within Atu0169 at 173.611 kb on + strand, within Atu0169 at 173.617 kb on - strand, within Atu0169 at 173.617 kb on - strand, within Atu0169 at 173.656 kb on + strand, within Atu0169 at 173.830 kb on + strand, within Atu0169 at 173.840 kb on + strand, within Atu0169 at 173.877 kb on + strand, within Atu0169 at 173.923 kb on + strand, within Atu0169 at 173.923 kb on + strand, within Atu0169 at 173.923 kb on + strand, within Atu0169 at 173.923 kb on + strand, within Atu0169 at 173.931 kb on - strand, within Atu0169 at 173.931 kb on - strand, within Atu0169
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days remove 171,498 + Atu0167 0.23 -0.6 171,550 + Atu0167 0.28 +1.1 171,594 - Atu0167 0.32 -1.2 172,028 - Atu0167 0.74 +2.1 172,077 - Atu0167 0.79 -1.7 172,149 + Atu0167 0.86 +0.2 172,149 + Atu0167 0.86 +0.3 172,225 + -0.4 172,381 + +0.2 172,401 - +0.4 172,509 + Atu0168 0.23 -0.0 172,540 + Atu0168 0.28 -0.1 172,554 + Atu0168 0.31 -0.4 172,554 + Atu0168 0.31 +0.1 172,554 + Atu0168 0.31 -2.1 172,562 - Atu0168 0.32 +0.4 172,646 - Atu0168 0.47 -1.7 172,713 + Atu0168 0.60 -0.7 172,812 + Atu0168 0.78 -0.0 173,057 - +1.0 173,155 + Atu0169 0.15 +0.5 173,163 - Atu0169 0.16 -0.3 173,315 - Atu0169 0.29 -0.2 173,316 + Atu0169 0.30 -0.4 173,383 - Atu0169 0.35 -0.6 173,461 - Atu0169 0.42 +0.6 173,611 + Atu0169 0.55 +0.8 173,617 - Atu0169 0.56 +0.7 173,617 - Atu0169 0.56 -1.0 173,656 + Atu0169 0.59 +0.1 173,830 + Atu0169 0.75 +0.7 173,840 + Atu0169 0.76 -0.1 173,877 + Atu0169 0.79 +0.4 173,923 + Atu0169 0.83 +0.2 173,923 + Atu0169 0.83 +0.5 173,923 + Atu0169 0.83 -1.7 173,923 + Atu0169 0.83 +0.6 173,931 - Atu0169 0.84 +0.8 173,931 - Atu0169 0.84 -0.3
Or see this region's nucleotide sequence