Strain Fitness in Agrobacterium fabrum C58 around Atu6076

Experiment: Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6074 and Atu6075 overlap by 1 nucleotidesAtu6075 and Atu6076 overlap by 1 nucleotidesAtu6076 and Atu6077 overlap by 19 nucleotides Atu6074: Atu6074 - ABC transporter, nucleotide binding/ATPase protein (peptide), at 88,210 to 89,877 Atu6074 Atu6075: Atu6075 - ABC transporter, membrane spanning protein (peptide), at 89,877 to 90,818 Atu6075 Atu6076: Atu6076 - ABC transporter, membrane spanning protein (peptide), at 90,818 to 91,819 Atu6076 Atu6077: Atu6077 - monooxygenase, at 91,801 to 93,288 Atu6077 Position (kb) 90 91 92Strain fitness (log2 ratio) -2 -1 0 1 2at 89.860 kb on + strandat 89.921 kb on + strandat 89.942 kb on - strandat 89.942 kb on - strandat 90.004 kb on + strand, within Atu6075at 90.080 kb on + strand, within Atu6075at 90.085 kb on + strand, within Atu6075at 90.103 kb on - strand, within Atu6075at 90.110 kb on + strand, within Atu6075at 90.124 kb on + strand, within Atu6075at 90.264 kb on + strand, within Atu6075at 90.296 kb on - strand, within Atu6075at 90.296 kb on - strand, within Atu6075at 90.304 kb on - strand, within Atu6075at 90.306 kb on + strand, within Atu6075at 90.376 kb on + strand, within Atu6075at 90.457 kb on + strand, within Atu6075at 90.506 kb on + strand, within Atu6075at 90.522 kb on - strand, within Atu6075at 90.527 kb on - strand, within Atu6075at 90.536 kb on + strand, within Atu6075at 90.537 kb on - strand, within Atu6075at 90.555 kb on - strand, within Atu6075at 90.586 kb on + strand, within Atu6075at 90.662 kb on + strand, within Atu6075at 90.717 kb on + strand, within Atu6075at 90.821 kb on - strandat 90.857 kb on - strandat 90.860 kb on + strandat 90.902 kb on - strandat 90.904 kb on + strandat 90.945 kb on - strand, within Atu6076at 90.977 kb on + strand, within Atu6076at 90.978 kb on + strand, within Atu6076at 90.985 kb on - strand, within Atu6076at 91.059 kb on + strand, within Atu6076at 91.072 kb on - strand, within Atu6076at 91.105 kb on - strand, within Atu6076at 91.112 kb on - strand, within Atu6076at 91.112 kb on - strand, within Atu6076at 91.158 kb on - strand, within Atu6076at 91.163 kb on + strand, within Atu6076at 91.163 kb on + strand, within Atu6076at 91.171 kb on - strand, within Atu6076at 91.171 kb on - strand, within Atu6076at 91.193 kb on - strand, within Atu6076at 91.255 kb on + strand, within Atu6076at 91.292 kb on - strand, within Atu6076at 91.349 kb on + strand, within Atu6076at 91.359 kb on + strand, within Atu6076at 91.359 kb on + strand, within Atu6076at 91.367 kb on - strand, within Atu6076at 91.367 kb on - strand, within Atu6076at 91.367 kb on - strand, within Atu6076at 91.367 kb on - strand, within Atu6076at 91.447 kb on + strand, within Atu6076at 91.521 kb on - strand, within Atu6076at 91.567 kb on + strand, within Atu6076at 91.580 kb on - strand, within Atu6076at 91.760 kb on - strandat 91.766 kb on + strandat 91.766 kb on + strandat 91.797 kb on - strandat 91.809 kb on - strandat 91.829 kb on - strandat 91.906 kb on + strandat 91.914 kb on - strandat 91.914 kb on - strandat 91.914 kb on - strandat 91.971 kb on - strand, within Atu6077at 92.008 kb on + strand, within Atu6077at 92.008 kb on + strand, within Atu6077at 92.008 kb on + strand, within Atu6077at 92.016 kb on - strand, within Atu6077at 92.016 kb on - strand, within Atu6077at 92.016 kb on - strand, within Atu6077at 92.016 kb on - strand, within Atu6077at 92.016 kb on - strand, within Atu6077at 92.016 kb on - strand, within Atu6077at 92.017 kb on - strand, within Atu6077at 92.024 kb on + strand, within Atu6077at 92.025 kb on + strand, within Atu6077at 92.032 kb on - strand, within Atu6077at 92.033 kb on - strand, within Atu6077at 92.048 kb on + strand, within Atu6077at 92.057 kb on - strand, within Atu6077at 92.074 kb on + strand, within Atu6077at 92.172 kb on - strand, within Atu6077at 92.221 kb on + strand, within Atu6077at 92.281 kb on - strand, within Atu6077at 92.329 kb on + strand, within Atu6077at 92.337 kb on - strand, within Atu6077at 92.348 kb on - strand, within Atu6077at 92.357 kb on + strand, within Atu6077at 92.514 kb on + strand, within Atu6077at 92.568 kb on - strand, within Atu6077at 92.579 kb on - strand, within Atu6077at 92.624 kb on - strand, within Atu6077at 92.666 kb on - strand, within Atu6077at 92.666 kb on - strand, within Atu6077at 92.666 kb on - strand, within Atu6077at 92.667 kb on - strand, within Atu6077at 92.667 kb on - strand, within Atu6077at 92.667 kb on - strand, within Atu6077at 92.680 kb on + strand, within Atu6077at 92.737 kb on - strand, within Atu6077at 92.776 kb on + strand, within Atu6077

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Time=7days
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89,860 + +0.3
89,921 + +0.9
89,942 - -0.2
89,942 - +0.2
90,004 + Atu6075 0.13 -2.3
90,080 + Atu6075 0.22 -2.0
90,085 + Atu6075 0.22 +0.2
90,103 - Atu6075 0.24 -0.1
90,110 + Atu6075 0.25 +0.1
90,124 + Atu6075 0.26 +0.2
90,264 + Atu6075 0.41 -0.1
90,296 - Atu6075 0.44 -0.2
90,296 - Atu6075 0.44 -1.0
90,304 - Atu6075 0.45 -0.9
90,306 + Atu6075 0.46 -0.0
90,376 + Atu6075 0.53 +0.1
90,457 + Atu6075 0.62 -0.1
90,506 + Atu6075 0.67 +0.0
90,522 - Atu6075 0.68 -0.3
90,527 - Atu6075 0.69 +1.8
90,536 + Atu6075 0.70 +0.2
90,537 - Atu6075 0.70 +1.2
90,555 - Atu6075 0.72 -0.8
90,586 + Atu6075 0.75 -0.7
90,662 + Atu6075 0.83 -0.6
90,717 + Atu6075 0.89 -0.0
90,821 - -0.2
90,857 - +0.1
90,860 + +1.8
90,902 - +2.1
90,904 + -0.4
90,945 - Atu6076 0.13 +0.3
90,977 + Atu6076 0.16 -0.2
90,978 + Atu6076 0.16 -1.2
90,985 - Atu6076 0.17 -2.0
91,059 + Atu6076 0.24 -1.2
91,072 - Atu6076 0.25 +0.0
91,105 - Atu6076 0.29 +0.5
91,112 - Atu6076 0.29 +0.1
91,112 - Atu6076 0.29 -1.0
91,158 - Atu6076 0.34 -0.7
91,163 + Atu6076 0.34 -0.9
91,163 + Atu6076 0.34 -0.8
91,171 - Atu6076 0.35 -0.7
91,171 - Atu6076 0.35 +0.6
91,193 - Atu6076 0.37 +0.0
91,255 + Atu6076 0.44 -0.6
91,292 - Atu6076 0.47 +0.7
91,349 + Atu6076 0.53 -0.2
91,359 + Atu6076 0.54 +0.3
91,359 + Atu6076 0.54 -1.5
91,367 - Atu6076 0.55 -1.6
91,367 - Atu6076 0.55 +0.1
91,367 - Atu6076 0.55 -0.2
91,367 - Atu6076 0.55 +1.4
91,447 + Atu6076 0.63 -0.2
91,521 - Atu6076 0.70 -0.3
91,567 + Atu6076 0.75 -0.0
91,580 - Atu6076 0.76 -1.3
91,760 - +0.2
91,766 + -2.6
91,766 + -1.8
91,797 - +0.8
91,809 - +0.6
91,829 - -0.0
91,906 + -0.2
91,914 - +0.2
91,914 - -0.1
91,914 - -1.0
91,971 - Atu6077 0.11 -1.5
92,008 + Atu6077 0.14 -2.0
92,008 + Atu6077 0.14 -0.4
92,008 + Atu6077 0.14 -0.5
92,016 - Atu6077 0.14 -1.2
92,016 - Atu6077 0.14 -0.4
92,016 - Atu6077 0.14 +0.4
92,016 - Atu6077 0.14 +0.0
92,016 - Atu6077 0.14 +0.4
92,016 - Atu6077 0.14 +0.1
92,017 - Atu6077 0.15 -0.5
92,024 + Atu6077 0.15 -0.3
92,025 + Atu6077 0.15 +0.2
92,032 - Atu6077 0.16 -0.5
92,033 - Atu6077 0.16 -0.1
92,048 + Atu6077 0.17 -2.1
92,057 - Atu6077 0.17 -1.0
92,074 + Atu6077 0.18 -0.2
92,172 - Atu6077 0.25 +0.8
92,221 + Atu6077 0.28 +0.0
92,281 - Atu6077 0.32 +0.5
92,329 + Atu6077 0.35 +0.2
92,337 - Atu6077 0.36 -0.0
92,348 - Atu6077 0.37 -0.3
92,357 + Atu6077 0.37 -1.3
92,514 + Atu6077 0.48 -0.7
92,568 - Atu6077 0.52 -0.7
92,579 - Atu6077 0.52 -0.4
92,624 - Atu6077 0.55 -0.1
92,666 - Atu6077 0.58 -0.3
92,666 - Atu6077 0.58 -0.7
92,666 - Atu6077 0.58 +0.4
92,667 - Atu6077 0.58 +0.4
92,667 - Atu6077 0.58 -0.1
92,667 - Atu6077 0.58 +0.2
92,680 + Atu6077 0.59 +2.2
92,737 - Atu6077 0.63 +0.4
92,776 + Atu6077 0.66 +0.6

Or see this region's nucleotide sequence