Strain Fitness in Pseudomonas simiae WCS417 around PS417_00035

Experiment: Wcs_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00025 and PS417_00030 are separated by 12 nucleotidesPS417_00030 and PS417_00035 are separated by 57 nucleotidesPS417_00035 and PS417_00040 are separated by 3 nucleotides PS417_00025: PS417_00025 - transcriptional regulator, at 6,537 to 7,259 _00025 PS417_00030: PS417_00030 - hypothetical protein, at 7,272 to 7,457 _00030 PS417_00035: PS417_00035 - hypothetical protein, at 7,515 to 8,432 _00035 PS417_00040: PS417_00040 - ATPase, at 8,436 to 10,715 _00040 Position (kb) 7 8 9Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6.539 kb on - strandat 6.539 kb on - strandat 6.581 kb on - strandat 6.586 kb on + strandat 6.586 kb on + strandat 6.587 kb on - strandat 6.587 kb on - strandat 6.587 kb on - strandat 6.587 kb on - strandat 6.587 kb on - strandat 6.587 kb on - strandat 6.598 kb on - strandat 6.646 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.650 kb on + strand, within PS417_00025at 6.651 kb on - strand, within PS417_00025at 6.651 kb on - strand, within PS417_00025at 6.651 kb on - strand, within PS417_00025at 6.651 kb on - strand, within PS417_00025at 6.651 kb on - strand, within PS417_00025at 6.651 kb on - strand, within PS417_00025at 6.651 kb on - strand, within PS417_00025at 6.712 kb on + strand, within PS417_00025at 6.755 kb on + strand, within PS417_00025at 6.946 kb on + strand, within PS417_00025at 6.947 kb on - strand, within PS417_00025at 6.947 kb on - strandat 7.095 kb on + strand, within PS417_00025at 7.355 kb on + strand, within PS417_00030at 7.356 kb on - strand, within PS417_00030at 7.356 kb on - strand, within PS417_00030at 7.357 kb on + strand, within PS417_00030at 7.543 kb on - strandat 7.543 kb on - strandat 7.543 kb on - strandat 7.543 kb on - strandat 7.620 kb on + strand, within PS417_00035at 7.621 kb on - strand, within PS417_00035at 7.621 kb on - strand, within PS417_00035at 7.908 kb on + strand, within PS417_00035at 7.909 kb on - strand, within PS417_00035at 7.909 kb on - strand, within PS417_00035at 8.202 kb on + strand, within PS417_00035at 8.203 kb on - strand, within PS417_00035at 8.270 kb on + strand, within PS417_00035at 8.334 kb on + strand, within PS417_00035at 8.391 kb on + strandat 8.392 kb on - strandat 8.392 kb on - strandat 8.403 kb on + strandat 8.403 kb on + strandat 8.403 kb on + strandat 8.403 kb on + strandat 8.403 kb on + strandat 8.404 kb on - strandat 8.404 kb on - strandat 8.404 kb on - strandat 8.404 kb on - strandat 8.404 kb on - strandat 8.404 kb on - strandat 8.471 kb on + strandat 8.471 kb on + strandat 8.472 kb on - strandat 8.528 kb on - strandat 8.528 kb on - strandat 8.592 kb on + strandat 8.593 kb on - strandat 8.871 kb on + strand, within PS417_00040at 8.872 kb on - strand, within PS417_00040at 9.027 kb on + strand, within PS417_00040at 9.156 kb on + strand, within PS417_00040at 9.197 kb on - strand, within PS417_00040at 9.197 kb on - strand, within PS417_00040at 9.298 kb on + strand, within PS417_00040at 9.298 kb on + strand, within PS417_00040at 9.299 kb on - strand, within PS417_00040

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Per-strain Table

Position Strand Gene LocusTag Fraction Wcs_0.1
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6,539 - -0.3
6,539 - -0.6
6,581 - +0.7
6,586 + -2.3
6,586 + +0.3
6,587 - +0.8
6,587 - +1.1
6,587 - -0.2
6,587 - -0.7
6,587 - +0.6
6,587 - +1.4
6,598 - +0.1
6,646 + PS417_00025 0.15 -0.3
6,650 + PS417_00025 0.16 +0.5
6,650 + PS417_00025 0.16 +0.4
6,650 + PS417_00025 0.16 -0.2
6,650 + PS417_00025 0.16 -0.8
6,650 + PS417_00025 0.16 +0.7
6,650 + PS417_00025 0.16 +0.8
6,650 + PS417_00025 0.16 +0.1
6,650 + PS417_00025 0.16 -0.0
6,650 + PS417_00025 0.16 +0.0
6,650 + PS417_00025 0.16 -0.0
6,650 + PS417_00025 0.16 +1.4
6,650 + PS417_00025 0.16 -1.2
6,650 + PS417_00025 0.16 +2.0
6,650 + PS417_00025 0.16 -0.0
6,650 + PS417_00025 0.16 +1.1
6,651 - PS417_00025 0.16 +0.4
6,651 - PS417_00025 0.16 +0.4
6,651 - PS417_00025 0.16 -1.0
6,651 - PS417_00025 0.16 +1.4
6,651 - PS417_00025 0.16 -0.1
6,651 - PS417_00025 0.16 -1.0
6,651 - PS417_00025 0.16 +0.4
6,712 + PS417_00025 0.24 -1.3
6,755 + PS417_00025 0.30 +1.2
6,946 + PS417_00025 0.57 +0.7
6,947 - PS417_00025 0.57 -0.3
6,947 - +2.0
7,095 + PS417_00025 0.77 -0.4
7,355 + PS417_00030 0.45 +2.8
7,356 - PS417_00030 0.45 +0.9
7,356 - PS417_00030 0.45 -0.2
7,357 + PS417_00030 0.46 -0.8
7,543 - +0.4
7,543 - -0.2
7,543 - -0.2
7,543 - -0.8
7,620 + PS417_00035 0.11 -0.4
7,621 - PS417_00035 0.12 -0.4
7,621 - PS417_00035 0.12 +0.1
7,908 + PS417_00035 0.43 -1.9
7,909 - PS417_00035 0.43 -0.4
7,909 - PS417_00035 0.43 -0.0
8,202 + PS417_00035 0.75 -1.9
8,203 - PS417_00035 0.75 -1.7
8,270 + PS417_00035 0.82 +1.1
8,334 + PS417_00035 0.89 -0.2
8,391 + +0.4
8,392 - -0.1
8,392 - -0.4
8,403 + +0.1
8,403 + +0.2
8,403 + +1.6
8,403 + -0.3
8,403 + -1.0
8,404 - -0.7
8,404 - +0.3
8,404 - -0.1
8,404 - +0.2
8,404 - -0.2
8,404 - +0.6
8,471 + +0.9
8,471 + -0.4
8,472 - -0.3
8,528 - +0.7
8,528 - -0.1
8,592 + +0.2
8,593 - -0.1
8,871 + PS417_00040 0.19 +0.9
8,872 - PS417_00040 0.19 -0.3
9,027 + PS417_00040 0.26 +0.2
9,156 + PS417_00040 0.32 -0.5
9,197 - PS417_00040 0.33 -0.0
9,197 - PS417_00040 0.33 +1.0
9,298 + PS417_00040 0.38 -0.3
9,298 + PS417_00040 0.38 +0.8
9,299 - PS417_00040 0.38 +2.0

Or see this region's nucleotide sequence