Strain Fitness in Pseudomonas simiae WCS417 around PS417_27995

Experiment: Wcs_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27985 and PS417_27990 are separated by 14 nucleotidesPS417_27990 and PS417_27995 are separated by 12 nucleotidesPS417_27995 and PS417_28000 are separated by 5 nucleotidesPS417_28000 and PS417_28005 are separated by 138 nucleotides PS417_27985: PS417_27985 - type VI secretion protein ImpA, at 6,038,483 to 6,040,423 _27985 PS417_27990: PS417_27990 - hypothetical protein, at 6,040,438 to 6,040,872 _27990 PS417_27995: PS417_27995 - type IV secretion protein Rhs, at 6,040,885 to 6,045,279 _27995 PS417_28000: PS417_28000 - hypothetical protein, at 6,045,285 to 6,045,734 _28000 PS417_28005: PS417_28005 - integration host factor, at 6,045,873 to 6,046,148 _28005 Position (kb) 6040 6041 6042 6043 6044 6045 6046Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6039.980 kb on + strand, within PS417_27985at 6039.980 kb on + strand, within PS417_27985at 6039.981 kb on - strand, within PS417_27985at 6039.981 kb on - strand, within PS417_27985at 6039.981 kb on - strand, within PS417_27985at 6039.982 kb on + strand, within PS417_27985at 6040.274 kb on + strandat 6040.274 kb on + strandat 6040.274 kb on + strandat 6040.275 kb on - strandat 6040.507 kb on - strand, within PS417_27990at 6040.637 kb on - strand, within PS417_27990at 6040.754 kb on + strand, within PS417_27990at 6040.787 kb on - strand, within PS417_27990at 6040.884 kb on + strandat 6040.884 kb on + strandat 6040.885 kb on - strandat 6040.885 kb on - strandat 6040.992 kb on + strandat 6041.700 kb on + strand, within PS417_27995at 6041.729 kb on + strand, within PS417_27995at 6041.738 kb on - strand, within PS417_27995at 6041.890 kb on + strand, within PS417_27995at 6041.966 kb on + strand, within PS417_27995at 6041.966 kb on + strand, within PS417_27995at 6041.967 kb on - strand, within PS417_27995at 6041.967 kb on - strand, within PS417_27995at 6041.972 kb on + strand, within PS417_27995at 6041.973 kb on - strand, within PS417_27995at 6041.973 kb on - strand, within PS417_27995at 6041.973 kb on - strand, within PS417_27995at 6041.973 kb on - strand, within PS417_27995at 6042.039 kb on + strand, within PS417_27995at 6042.041 kb on + strand, within PS417_27995at 6042.135 kb on - strand, within PS417_27995at 6042.135 kb on - strand, within PS417_27995at 6042.135 kb on - strand, within PS417_27995at 6042.135 kb on - strand, within PS417_27995at 6042.135 kb on - strand, within PS417_27995at 6042.136 kb on + strand, within PS417_27995at 6042.136 kb on + strand, within PS417_27995at 6042.137 kb on - strand, within PS417_27995at 6042.137 kb on - strand, within PS417_27995at 6042.167 kb on + strand, within PS417_27995at 6042.168 kb on - strand, within PS417_27995at 6042.183 kb on + strand, within PS417_27995at 6042.184 kb on - strand, within PS417_27995at 6042.361 kb on + strand, within PS417_27995at 6042.361 kb on + strand, within PS417_27995at 6042.361 kb on + strand, within PS417_27995at 6042.362 kb on - strand, within PS417_27995at 6042.367 kb on + strand, within PS417_27995at 6042.417 kb on - strand, within PS417_27995at 6042.490 kb on + strand, within PS417_27995at 6042.528 kb on - strand, within PS417_27995at 6042.560 kb on - strand, within PS417_27995at 6042.572 kb on - strand, within PS417_27995at 6042.661 kb on + strand, within PS417_27995at 6042.662 kb on - strand, within PS417_27995at 6042.662 kb on - strand, within PS417_27995at 6042.755 kb on - strand, within PS417_27995at 6042.755 kb on - strand, within PS417_27995at 6042.756 kb on + strand, within PS417_27995at 6042.756 kb on + strand, within PS417_27995at 6042.756 kb on + strand, within PS417_27995at 6042.756 kb on + strand, within PS417_27995at 6042.757 kb on - strand, within PS417_27995at 6042.757 kb on - strand, within PS417_27995at 6042.757 kb on - strand, within PS417_27995at 6042.757 kb on - strand, within PS417_27995at 6042.757 kb on - strand, within PS417_27995at 6042.760 kb on + strand, within PS417_27995at 6042.761 kb on - strand, within PS417_27995at 6042.884 kb on - strand, within PS417_27995at 6043.128 kb on + strand, within PS417_27995at 6043.198 kb on + strand, within PS417_27995at 6043.198 kb on + strand, within PS417_27995at 6043.210 kb on - strand, within PS417_27995at 6043.221 kb on - strand, within PS417_27995at 6043.262 kb on - strand, within PS417_27995at 6043.262 kb on - strand, within PS417_27995at 6043.262 kb on - strand, within PS417_27995at 6043.262 kb on - strand, within PS417_27995at 6043.306 kb on + strand, within PS417_27995at 6043.331 kb on - strand, within PS417_27995at 6043.339 kb on + strand, within PS417_27995at 6043.339 kb on + strand, within PS417_27995at 6043.382 kb on - strand, within PS417_27995at 6043.450 kb on + strand, within PS417_27995at 6043.450 kb on + strand, within PS417_27995at 6043.456 kb on + strand, within PS417_27995at 6043.456 kb on + strand, within PS417_27995at 6043.457 kb on - strand, within PS417_27995at 6043.457 kb on - strand, within PS417_27995at 6043.457 kb on - strand, within PS417_27995at 6043.457 kb on - strand, within PS417_27995at 6043.512 kb on + strand, within PS417_27995at 6043.512 kb on + strand, within PS417_27995at 6043.513 kb on - strand, within PS417_27995at 6043.759 kb on + strand, within PS417_27995at 6043.779 kb on - strand, within PS417_27995at 6043.823 kb on - strand, within PS417_27995at 6043.870 kb on - strand, within PS417_27995at 6043.870 kb on - strand, within PS417_27995at 6043.910 kb on + strand, within PS417_27995at 6043.910 kb on + strand, within PS417_27995at 6043.910 kb on + strand, within PS417_27995at 6043.911 kb on - strand, within PS417_27995at 6043.911 kb on - strand, within PS417_27995at 6043.914 kb on + strand, within PS417_27995at 6043.914 kb on + strand, within PS417_27995at 6043.915 kb on - strand, within PS417_27995at 6043.986 kb on + strand, within PS417_27995at 6043.986 kb on + strand, within PS417_27995at 6043.986 kb on + strand, within PS417_27995at 6044.169 kb on + strand, within PS417_27995at 6044.169 kb on + strand, within PS417_27995at 6044.173 kb on + strand, within PS417_27995at 6044.173 kb on + strand, within PS417_27995at 6044.173 kb on + strand, within PS417_27995at 6044.222 kb on + strand, within PS417_27995at 6044.223 kb on - strand, within PS417_27995at 6044.225 kb on + strand, within PS417_27995at 6044.225 kb on + strand, within PS417_27995at 6044.226 kb on - strand, within PS417_27995at 6044.228 kb on + strand, within PS417_27995at 6044.229 kb on - strand, within PS417_27995at 6044.229 kb on - strand, within PS417_27995at 6044.229 kb on - strand, within PS417_27995at 6044.229 kb on - strand, within PS417_27995at 6044.232 kb on + strand, within PS417_27995at 6044.232 kb on + strand, within PS417_27995at 6044.232 kb on + strand, within PS417_27995at 6044.232 kb on + strand, within PS417_27995at 6044.233 kb on - strand, within PS417_27995at 6044.233 kb on - strand, within PS417_27995at 6044.233 kb on - strand, within PS417_27995at 6044.248 kb on + strand, within PS417_27995at 6044.248 kb on + strand, within PS417_27995at 6044.248 kb on + strand, within PS417_27995at 6044.249 kb on - strand, within PS417_27995at 6044.319 kb on - strand, within PS417_27995at 6044.396 kb on - strand, within PS417_27995at 6044.506 kb on + strand, within PS417_27995at 6044.506 kb on + strand, within PS417_27995at 6044.507 kb on - strand, within PS417_27995at 6044.507 kb on - strand, within PS417_27995at 6044.523 kb on - strand, within PS417_27995at 6044.524 kb on + strand, within PS417_27995at 6044.524 kb on + strand, within PS417_27995at 6044.524 kb on + strand, within PS417_27995at 6044.524 kb on + strand, within PS417_27995at 6044.525 kb on - strand, within PS417_27995at 6044.525 kb on - strand, within PS417_27995at 6044.525 kb on - strand, within PS417_27995at 6044.525 kb on - strand, within PS417_27995at 6044.525 kb on - strand, within PS417_27995at 6044.525 kb on - strand, within PS417_27995at 6044.525 kb on - strand, within PS417_27995at 6044.525 kb on - strand, within PS417_27995at 6044.599 kb on + strand, within PS417_27995at 6044.599 kb on + strand, within PS417_27995at 6044.716 kb on + strand, within PS417_27995at 6044.717 kb on - strand, within PS417_27995at 6044.717 kb on - strand, within PS417_27995at 6044.811 kb on - strand, within PS417_27995at 6044.820 kb on + strand, within PS417_27995at 6044.820 kb on + strand, within PS417_27995at 6044.820 kb on + strand, within PS417_27995at 6044.820 kb on + strand, within PS417_27995at 6044.820 kb on + strand, within PS417_27995at 6044.820 kb on + strand, within PS417_27995at 6044.864 kb on - strandat 6044.868 kb on - strandat 6044.870 kb on - strandat 6045.169 kb on - strandat 6045.173 kb on - strandat 6045.211 kb on - strandat 6045.211 kb on - strandat 6045.728 kb on + strandat 6045.733 kb on - strandat 6045.786 kb on + strandat 6046.148 kb on + strandat 6046.148 kb on + strandat 6046.149 kb on - strandat 6046.180 kb on + strandat 6046.180 kb on + strandat 6046.180 kb on + strandat 6046.180 kb on + strandat 6046.180 kb on + strandat 6046.181 kb on - strandat 6046.181 kb on - strandat 6046.181 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Wcs_0.1
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6,039,980 + PS417_27985 0.77 -0.3
6,039,980 + PS417_27985 0.77 -0.1
6,039,981 - PS417_27985 0.77 -0.4
6,039,981 - PS417_27985 0.77 -1.2
6,039,981 - PS417_27985 0.77 +0.6
6,039,982 + PS417_27985 0.77 -0.6
6,040,274 + -2.3
6,040,274 + +0.2
6,040,274 + -0.4
6,040,275 - -0.8
6,040,507 - PS417_27990 0.16 +0.7
6,040,637 - PS417_27990 0.46 -1.8
6,040,754 + PS417_27990 0.73 -0.3
6,040,787 - PS417_27990 0.80 -0.9
6,040,884 + +0.4
6,040,884 + +1.6
6,040,885 - +0.6
6,040,885 - -0.1
6,040,992 + -0.8
6,041,700 + PS417_27995 0.19 +0.6
6,041,729 + PS417_27995 0.19 +0.4
6,041,738 - PS417_27995 0.19 +0.9
6,041,890 + PS417_27995 0.23 +0.6
6,041,966 + PS417_27995 0.25 +1.5
6,041,966 + PS417_27995 0.25 -0.9
6,041,967 - PS417_27995 0.25 +1.3
6,041,967 - PS417_27995 0.25 -0.2
6,041,972 + PS417_27995 0.25 +0.7
6,041,973 - PS417_27995 0.25 -0.1
6,041,973 - PS417_27995 0.25 +1.2
6,041,973 - PS417_27995 0.25 +0.5
6,041,973 - PS417_27995 0.25 +1.0
6,042,039 + PS417_27995 0.26 +0.3
6,042,041 + PS417_27995 0.26 -0.4
6,042,135 - PS417_27995 0.28 +0.1
6,042,135 - PS417_27995 0.28 -1.6
6,042,135 - PS417_27995 0.28 +1.1
6,042,135 - PS417_27995 0.28 -0.1
6,042,135 - PS417_27995 0.28 +0.3
6,042,136 + PS417_27995 0.28 -1.0
6,042,136 + PS417_27995 0.28 +0.6
6,042,137 - PS417_27995 0.28 +0.3
6,042,137 - PS417_27995 0.28 -1.6
6,042,167 + PS417_27995 0.29 -0.3
6,042,168 - PS417_27995 0.29 +0.9
6,042,183 + PS417_27995 0.30 +0.3
6,042,184 - PS417_27995 0.30 +0.7
6,042,361 + PS417_27995 0.34 -0.3
6,042,361 + PS417_27995 0.34 +0.6
6,042,361 + PS417_27995 0.34 +0.1
6,042,362 - PS417_27995 0.34 -1.7
6,042,367 + PS417_27995 0.34 +1.7
6,042,417 - PS417_27995 0.35 -0.2
6,042,490 + PS417_27995 0.37 +0.5
6,042,528 - PS417_27995 0.37 -0.4
6,042,560 - PS417_27995 0.38 -0.6
6,042,572 - PS417_27995 0.38 -0.3
6,042,661 + PS417_27995 0.40 +1.2
6,042,662 - PS417_27995 0.40 +0.4
6,042,662 - PS417_27995 0.40 +1.0
6,042,755 - PS417_27995 0.43 +0.4
6,042,755 - PS417_27995 0.43 +0.1
6,042,756 + PS417_27995 0.43 -1.9
6,042,756 + PS417_27995 0.43 +0.0
6,042,756 + PS417_27995 0.43 +1.5
6,042,756 + PS417_27995 0.43 +1.7
6,042,757 - PS417_27995 0.43 +0.2
6,042,757 - PS417_27995 0.43 +0.1
6,042,757 - PS417_27995 0.43 +0.7
6,042,757 - PS417_27995 0.43 -0.9
6,042,757 - PS417_27995 0.43 +0.6
6,042,760 + PS417_27995 0.43 +0.7
6,042,761 - PS417_27995 0.43 +0.1
6,042,884 - PS417_27995 0.45 -0.4
6,043,128 + PS417_27995 0.51 +0.1
6,043,198 + PS417_27995 0.53 -0.1
6,043,198 + PS417_27995 0.53 +0.2
6,043,210 - PS417_27995 0.53 -0.1
6,043,221 - PS417_27995 0.53 -0.2
6,043,262 - PS417_27995 0.54 -1.4
6,043,262 - PS417_27995 0.54 +0.3
6,043,262 - PS417_27995 0.54 -0.9
6,043,262 - PS417_27995 0.54 +0.2
6,043,306 + PS417_27995 0.55 +1.5
6,043,331 - PS417_27995 0.56 -0.1
6,043,339 + PS417_27995 0.56 -0.5
6,043,339 + PS417_27995 0.56 -0.0
6,043,382 - PS417_27995 0.57 +0.2
6,043,450 + PS417_27995 0.58 -0.4
6,043,450 + PS417_27995 0.58 +0.0
6,043,456 + PS417_27995 0.58 +1.4
6,043,456 + PS417_27995 0.58 -1.3
6,043,457 - PS417_27995 0.59 -0.1
6,043,457 - PS417_27995 0.59 -0.4
6,043,457 - PS417_27995 0.59 +0.1
6,043,457 - PS417_27995 0.59 +0.2
6,043,512 + PS417_27995 0.60 +0.1
6,043,512 + PS417_27995 0.60 +0.1
6,043,513 - PS417_27995 0.60 +0.9
6,043,759 + PS417_27995 0.65 +0.9
6,043,779 - PS417_27995 0.66 -0.9
6,043,823 - PS417_27995 0.67 -0.4
6,043,870 - PS417_27995 0.68 -0.1
6,043,870 - PS417_27995 0.68 +1.2
6,043,910 + PS417_27995 0.69 -2.2
6,043,910 + PS417_27995 0.69 +0.9
6,043,910 + PS417_27995 0.69 -0.1
6,043,911 - PS417_27995 0.69 +0.6
6,043,911 - PS417_27995 0.69 -0.7
6,043,914 + PS417_27995 0.69 +0.2
6,043,914 + PS417_27995 0.69 -0.5
6,043,915 - PS417_27995 0.69 +0.5
6,043,986 + PS417_27995 0.71 +0.9
6,043,986 + PS417_27995 0.71 +0.6
6,043,986 + PS417_27995 0.71 +0.9
6,044,169 + PS417_27995 0.75 +0.2
6,044,169 + PS417_27995 0.75 +0.7
6,044,173 + PS417_27995 0.75 +0.3
6,044,173 + PS417_27995 0.75 -0.1
6,044,173 + PS417_27995 0.75 +0.5
6,044,222 + PS417_27995 0.76 -0.4
6,044,223 - PS417_27995 0.76 +0.3
6,044,225 + PS417_27995 0.76 +2.1
6,044,225 + PS417_27995 0.76 -0.4
6,044,226 - PS417_27995 0.76 +0.1
6,044,228 + PS417_27995 0.76 -0.2
6,044,229 - PS417_27995 0.76 +0.3
6,044,229 - PS417_27995 0.76 +0.8
6,044,229 - PS417_27995 0.76 -0.6
6,044,229 - PS417_27995 0.76 -0.9
6,044,232 + PS417_27995 0.76 -1.4
6,044,232 + PS417_27995 0.76 -0.3
6,044,232 + PS417_27995 0.76 +1.1
6,044,232 + PS417_27995 0.76 +0.8
6,044,233 - PS417_27995 0.76 +1.4
6,044,233 - PS417_27995 0.76 +1.8
6,044,233 - PS417_27995 0.76 +1.4
6,044,248 + PS417_27995 0.77 -2.2
6,044,248 + PS417_27995 0.77 -0.1
6,044,248 + PS417_27995 0.77 +1.0
6,044,249 - PS417_27995 0.77 +0.7
6,044,319 - PS417_27995 0.78 -1.2
6,044,396 - PS417_27995 0.80 +0.0
6,044,506 + PS417_27995 0.82 -1.2
6,044,506 + PS417_27995 0.82 -0.1
6,044,507 - PS417_27995 0.82 +0.2
6,044,507 - PS417_27995 0.82 +3.6
6,044,523 - PS417_27995 0.83 +3.1
6,044,524 + PS417_27995 0.83 -0.2
6,044,524 + PS417_27995 0.83 +0.5
6,044,524 + PS417_27995 0.83 +0.8
6,044,524 + PS417_27995 0.83 +0.5
6,044,525 - PS417_27995 0.83 +0.1
6,044,525 - PS417_27995 0.83 +1.0
6,044,525 - PS417_27995 0.83 -0.6
6,044,525 - PS417_27995 0.83 -2.3
6,044,525 - PS417_27995 0.83 +0.1
6,044,525 - PS417_27995 0.83 -0.3
6,044,525 - PS417_27995 0.83 +1.0
6,044,525 - PS417_27995 0.83 -0.6
6,044,599 + PS417_27995 0.85 +1.1
6,044,599 + PS417_27995 0.85 -0.2
6,044,716 + PS417_27995 0.87 +0.6
6,044,717 - PS417_27995 0.87 -0.3
6,044,717 - PS417_27995 0.87 -0.1
6,044,811 - PS417_27995 0.89 +0.3
6,044,820 + PS417_27995 0.90 -0.5
6,044,820 + PS417_27995 0.90 +0.7
6,044,820 + PS417_27995 0.90 +0.2
6,044,820 + PS417_27995 0.90 +1.1
6,044,820 + PS417_27995 0.90 -1.0
6,044,820 + PS417_27995 0.90 +0.2
6,044,864 - -0.6
6,044,868 - -0.9
6,044,870 - +0.4
6,045,169 - +0.5
6,045,173 - -0.6
6,045,211 - +1.5
6,045,211 - -0.1
6,045,728 + +0.1
6,045,733 - +2.1
6,045,786 + +0.4
6,046,148 + -0.3
6,046,148 + -1.8
6,046,149 - +2.1
6,046,180 + +0.5
6,046,180 + -0.3
6,046,180 + +0.4
6,046,180 + +0.1
6,046,180 + -0.0
6,046,181 - -0.0
6,046,181 - +0.8
6,046,181 - +2.7

Or see this region's nucleotide sequence