Experiment: Wcs_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26510 and PS417_26515 are separated by 77 nucleotides PS417_26515 and PS417_26520 are separated by 73 nucleotides
PS417_26510: PS417_26510 - 5,10-methylenetetrahydrofolate reductase, at 5,733,540 to 5,734,385
_26510
PS417_26515: PS417_26515 - hypothetical protein, at 5,734,463 to 5,735,545
_26515
PS417_26520: PS417_26520 - amino acid ABC transporter substrate-binding protein, at 5,735,619 to 5,736,410
_26520
Position (kb) 5734
5735
5736 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5733.504 kb on + strand at 5733.505 kb on - strand at 5733.505 kb on - strand at 5733.636 kb on + strand, within PS417_26510 at 5733.636 kb on + strand, within PS417_26510 at 5733.636 kb on + strand, within PS417_26510 at 5733.637 kb on - strand, within PS417_26510 at 5733.885 kb on + strand, within PS417_26510 at 5734.050 kb on + strand, within PS417_26510 at 5734.051 kb on - strand, within PS417_26510 at 5734.071 kb on + strand, within PS417_26510 at 5734.071 kb on + strand, within PS417_26510 at 5734.072 kb on - strand, within PS417_26510 at 5734.072 kb on - strand, within PS417_26510 at 5734.149 kb on + strand, within PS417_26510 at 5734.150 kb on - strand, within PS417_26510 at 5734.209 kb on - strand, within PS417_26510 at 5734.277 kb on + strand, within PS417_26510 at 5734.277 kb on + strand, within PS417_26510 at 5734.277 kb on + strand, within PS417_26510 at 5734.278 kb on - strand, within PS417_26510 at 5734.278 kb on - strand, within PS417_26510 at 5734.323 kb on + strand at 5734.323 kb on + strand at 5734.324 kb on - strand at 5734.324 kb on - strand at 5734.438 kb on + strand at 5734.454 kb on + strand at 5734.455 kb on - strand at 5734.468 kb on + strand at 5734.468 kb on + strand at 5734.468 kb on + strand at 5734.469 kb on - strand at 5734.503 kb on - strand at 5734.527 kb on - strand at 5734.653 kb on + strand, within PS417_26515 at 5734.853 kb on + strand, within PS417_26515 at 5734.854 kb on - strand, within PS417_26515 at 5734.889 kb on + strand, within PS417_26515 at 5734.890 kb on - strand, within PS417_26515 at 5735.049 kb on - strand, within PS417_26515 at 5735.337 kb on - strand, within PS417_26515 at 5735.658 kb on - strand at 5735.658 kb on - strand at 5735.658 kb on - strand at 5735.680 kb on - strand at 5735.722 kb on - strand, within PS417_26520 at 5735.722 kb on - strand, within PS417_26520 at 5735.722 kb on - strand, within PS417_26520 at 5735.722 kb on - strand, within PS417_26520 at 5735.722 kb on - strand, within PS417_26520 at 5735.722 kb on - strand, within PS417_26520 at 5735.728 kb on - strand, within PS417_26520 at 5736.031 kb on - strand, within PS417_26520 at 5736.342 kb on + strand at 5736.421 kb on - strand at 5736.421 kb on - strand at 5736.422 kb on + strand at 5736.423 kb on - strand at 5736.423 kb on - strand at 5736.423 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Wcs_0.1 remove 5,733,504 + +0.3 5,733,505 - -0.6 5,733,505 - +0.4 5,733,636 + PS417_26510 0.11 +0.4 5,733,636 + PS417_26510 0.11 +0.4 5,733,636 + PS417_26510 0.11 -0.8 5,733,637 - PS417_26510 0.11 -1.0 5,733,885 + PS417_26510 0.41 -0.7 5,734,050 + PS417_26510 0.60 -2.8 5,734,051 - PS417_26510 0.60 +0.3 5,734,071 + PS417_26510 0.63 -2.8 5,734,071 + PS417_26510 0.63 -1.3 5,734,072 - PS417_26510 0.63 +0.5 5,734,072 - PS417_26510 0.63 -1.1 5,734,149 + PS417_26510 0.72 +2.3 5,734,150 - PS417_26510 0.72 +0.2 5,734,209 - PS417_26510 0.79 -0.7 5,734,277 + PS417_26510 0.87 -0.0 5,734,277 + PS417_26510 0.87 -0.7 5,734,277 + PS417_26510 0.87 +0.5 5,734,278 - PS417_26510 0.87 +0.6 5,734,278 - PS417_26510 0.87 -0.8 5,734,323 + +0.4 5,734,323 + -0.6 5,734,324 - -0.2 5,734,324 - +1.0 5,734,438 + -0.2 5,734,454 + +0.4 5,734,455 - +1.1 5,734,468 + +1.0 5,734,468 + +2.6 5,734,468 + +0.7 5,734,469 - +0.3 5,734,503 - -0.5 5,734,527 - +0.7 5,734,653 + PS417_26515 0.18 +0.9 5,734,853 + PS417_26515 0.36 +2.0 5,734,854 - PS417_26515 0.36 +2.5 5,734,889 + PS417_26515 0.39 +0.7 5,734,890 - PS417_26515 0.39 +1.6 5,735,049 - PS417_26515 0.54 -0.8 5,735,337 - PS417_26515 0.81 +1.2 5,735,658 - -2.7 5,735,658 - -0.6 5,735,658 - +2.5 5,735,680 - -1.0 5,735,722 - PS417_26520 0.13 -0.3 5,735,722 - PS417_26520 0.13 +0.0 5,735,722 - PS417_26520 0.13 +1.0 5,735,722 - PS417_26520 0.13 -0.1 5,735,722 - PS417_26520 0.13 -0.4 5,735,722 - PS417_26520 0.13 -0.0 5,735,728 - PS417_26520 0.14 -0.3 5,736,031 - PS417_26520 0.52 -0.2 5,736,342 + -0.2 5,736,421 - +2.0 5,736,421 - -0.3 5,736,422 + -0.6 5,736,423 - +0.6 5,736,423 - -1.6 5,736,423 - -0.2
Or see this region's nucleotide sequence