Experiment: Wcs_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26180 and PS417_26185 overlap by 4 nucleotides PS417_26185 and PS417_26190 are separated by 15 nucleotides PS417_26190 and PS417_26195 are separated by 22 nucleotides
PS417_26180: PS417_26180 - sarcosine oxidase subunit alpha, at 5,656,055 to 5,659,072
_26180
PS417_26185: PS417_26185 - sarcosine oxidase subunit delta, at 5,659,069 to 5,659,371
_26185
PS417_26190: PS417_26190 - sarcosine oxidase subunit beta, at 5,659,387 to 5,660,637
_26190
PS417_26195: PS417_26195 - serine hydroxymethyltransferase, at 5,660,660 to 5,661,913
_26195
Position (kb) 5659
5660
5661 Strain fitness (log2 ratio) -1
0
1
2
3 at 5658.583 kb on - strand, within PS417_26180 at 5658.639 kb on + strand, within PS417_26180 at 5658.640 kb on - strand, within PS417_26180 at 5658.690 kb on + strand, within PS417_26180 at 5658.690 kb on + strand, within PS417_26180 at 5658.795 kb on + strand at 5658.796 kb on - strand at 5659.025 kb on - strand at 5659.124 kb on + strand, within PS417_26185 at 5659.124 kb on + strand, within PS417_26185 at 5659.143 kb on - strand, within PS417_26185 at 5659.172 kb on + strand, within PS417_26185 at 5659.172 kb on + strand, within PS417_26185 at 5659.172 kb on + strand, within PS417_26185 at 5659.244 kb on + strand, within PS417_26185 at 5659.245 kb on - strand, within PS417_26185 at 5659.245 kb on - strand, within PS417_26185 at 5659.362 kb on + strand at 5659.362 kb on + strand at 5659.363 kb on - strand at 5659.371 kb on + strand at 5659.737 kb on - strand, within PS417_26190 at 5659.790 kb on + strand, within PS417_26190 at 5659.791 kb on - strand, within PS417_26190 at 5660.313 kb on - strand, within PS417_26190 at 5660.360 kb on + strand, within PS417_26190 at 5660.387 kb on + strand, within PS417_26190 at 5660.387 kb on + strand, within PS417_26190 at 5660.489 kb on + strand, within PS417_26190 at 5660.628 kb on - strand at 5661.055 kb on - strand, within PS417_26195 at 5661.416 kb on - strand, within PS417_26195 at 5661.597 kb on + strand, within PS417_26195 at 5661.598 kb on - strand, within PS417_26195 at 5661.598 kb on - strand, within PS417_26195 at 5661.598 kb on - strand, within PS417_26195
Per-strain Table
Position Strand Gene LocusTag Fraction Wcs_0.1 remove 5,658,583 - PS417_26180 0.84 -0.2 5,658,639 + PS417_26180 0.86 +0.4 5,658,640 - PS417_26180 0.86 +0.2 5,658,690 + PS417_26180 0.87 -0.1 5,658,690 + PS417_26180 0.87 +0.1 5,658,795 + -0.3 5,658,796 - +0.2 5,659,025 - -0.6 5,659,124 + PS417_26185 0.18 +0.1 5,659,124 + PS417_26185 0.18 -0.6 5,659,143 - PS417_26185 0.24 +0.8 5,659,172 + PS417_26185 0.34 +0.0 5,659,172 + PS417_26185 0.34 -0.5 5,659,172 + PS417_26185 0.34 -0.5 5,659,244 + PS417_26185 0.58 +0.5 5,659,245 - PS417_26185 0.58 -0.1 5,659,245 - PS417_26185 0.58 -0.2 5,659,362 + -0.7 5,659,362 + +2.4 5,659,363 - +0.1 5,659,371 + +0.0 5,659,737 - PS417_26190 0.28 -0.1 5,659,790 + PS417_26190 0.32 +0.5 5,659,791 - PS417_26190 0.32 +0.3 5,660,313 - PS417_26190 0.74 +1.5 5,660,360 + PS417_26190 0.78 -0.1 5,660,387 + PS417_26190 0.80 +1.3 5,660,387 + PS417_26190 0.80 +3.5 5,660,489 + PS417_26190 0.88 -0.1 5,660,628 - +1.9 5,661,055 - PS417_26195 0.31 +1.6 5,661,416 - PS417_26195 0.60 +0.3 5,661,597 + PS417_26195 0.75 +0.6 5,661,598 - PS417_26195 0.75 +0.5 5,661,598 - PS417_26195 0.75 +0.3 5,661,598 - PS417_26195 0.75 -0.7
Or see this region's nucleotide sequence